Illumina MiSeq data report
Tue Oct 23 08:00:01 EDT 2018

This report details the progress in archiving sequencing data and processing gene therapy sequencing runs.

Sequencing runs that failed are highlighted in red while development runs are highlighted in yellow.
Runs annotated as gene therapy trials report the status of their integration site analyses.

Runs with missing sample data report admin comments when available.

Column details:
data archived (yes/no) sequencing data has been stored in both its primary and secondary archive locations.
The data sizes following this flag denote the data sizes in the data output directory, primary archive and secondary archive.
A dash for the output directory data size means that this data has been removed to conserve space.
Notable size differences between archives are noted in red.
run registered (yes/no) sequencing run event has been registered in the sequencing registry.
samples registered (yes/no) meta data for samples within a run have been registered in the sequencing registry.
intSites called (yes/no) integration site analyses have been performed (gene therapy runs only)
admin administrator notes for runs where the sample meta data has not been archived in the registry.



Status Run id data archived run registered samples registered intSites called links admin
production/successful180105_M03249_0307_000000000-BJTJCyes (-, 1.4 GB, 1.4 GB) yesno- -Meagan Rubel, MAR_Cameroon_V4_Run1_1518.
production/successful180118_M03249_0308_000000000-BGFVCyes (-, 2.7 GB, 2.7 GB) yesno- -Meagan Rubel, Cameroon V4 Run 1, Attempt 2. First 192 Cameroon gut microbiome samples.
production/successful180124_M03249_0309_000000000-BCHL7yes (-, 4.2 GB, 4.2 GB) yesno- -Meagan Rubel, CM_V4_R2.
production/successful180126_M03249_0310_000000000-BM26Fyes (-, 0.0 GB, 0.0 GB) yesyes- -Lyanna Kessler, Baby Virome Shotgun.
production/successful180130_M03249_0311_000000000-BLDNCyes (-, 0.1 GB, 0.1 GB) yesno- -Meagan Rubel, CM_V4_R3.
production/successful180130_M03249_0312_000000000-BL49Myes (-, 4.9 GB, 4.9 GB) yesno- -Meagan Rubel, CM_V4_R3.
production/successful180131_M00281_0317_000000000-BLFD2yes (-, 1.4 GB, 1.4 GB) yesno- -Shantan Reddy; Paul Bates; Zika CRISPR Screen
development/successful180201_M03249_0313_000000000-B6V99yes (-, 1.8 GB, 1.8 GB) yesno- -Shantan Reddy; iGuideSeq; Sample Run Set1
development/successful180205_M03249_0314_000000000-BM8GWyes (-, 2.1 GB, 2.1 GB) yesno- -Shantan Reddy; iGuide; Sample Run Set2 negative strand
development/successful180212_M03249_0315_000000000-BLLNKyes (-, 6.0 GB, 6.0 GB) yesno- -Shantan Reddy; iGuide; Sample Run Set2 negative strand
development/successful180214_M03249_0316_000000000-BLDRHyes (-, 2.2 GB, 2.2 GB) yesno- -Shantan Reddy; iGuide; Sample Run Set3 negative strand
development/successful180215_M00281_0322_000000000-BM6NMyes (-, 0.2 GB, 0.2 GB) yesno- -Shantan Reddy; Paul Bates; Zika CRISPR Screen rerun
production/successful180216_M03249_0317_000000000-BMWY8yes (-, 0.1 GB, 0.1 GB) yesno- -Jake Leiby; piggyBac, adenovirus vectors, Patrick Sinn,pig model
production/successful180220_M00281_0323_000000000-BMWYVyes (-, 0.2 GB, 3.1 GB) yesyes- -Jake Leiby; piggyBac, adenovirus vectors, Patrick Sinn,pig model
production/successful180220_M03249_0318_000000000-BMHHPyes (-, 2.3 GB, 2.3 GB) yesyes- -John Gregg; Scott Sherrill-Mix; HIV Provirus; p108, p111, p159, p241.
production/successful180222_M03249_0319_000000000-BMHW4yes (-, 3.7 GB, 3.7 GB) yesyesyes -John Gregg; David Williams; SCIDn2 GeneTherapy p00007, p00003
production/successful180227_M03249_0320_000000000-BNDMWyes (-, 4.4 GB, 4.4 GB) yesyesyes -Shantan Reddy; David Williams; SCIDn2 GeneTherapy p00009, p00008, p00005
production/successful180301_M03249_0321_000000000-BNDFGyes (-, 1.8 GB, 1.8 GB) yesno- -Shantan Reddy; Paul Bates; Zika CRISPR Screen rerun2
production/successful180305_M00281_0327_000000000-BMK22yes (-, 1.3 GB, 1.3 GB) yesyes- -Vincent Wu; Mike Betts; HIV Provirus; Custom Primers; E2S, CAGN, JAGN.
production/successful180305_M03249_0322_000000000-BMCRNyes (-, 4.4 GB, 4.4 GB) yesyesyes -Shantan Reddy; Sung-Yun Pai and David Williams; pWAS00006
production/successful180308_M03249_0323_000000000-BN9MTyes (-, 5.0 GB, 4.9 GB) yesyesyes -Shantan Reddy; Sung-Yun Pai and David Williams; pWAS00006, pWAS00005, pWAS00004
production/successful180314_M03249_0324_000000000-BNL7Myes (-, 5.9 GB, 5.9 GB) yesyesyes -John Gregg; David Williams; CGD GeneTherapy pU103
production/successful180316_M03249_0325_000000000-BNBPMyes (-, 5.8 GB, 5.8 GB) yesyesyes -John Gregg; David Williams; CGD GeneTherapy pN102, pB101
production/successful180319_M03249_0326_000000000-BNL7Ryes (-, 4.2 GB, 4.2 GB) yesyesyes -Shantan Reddy; Leo Wang and David Williams; CGD GeneTherapy pU103, pN104, pN102
production/successful180322_M03249_0327_000000000-BNRJFyes (-, 3.8 GB, 3.8 GB) yesyesyes -Shantan Reddy; David Williams; SCIDn2 GeneTherapy p00003, p00008
production/successful180323_M00281_0335_000000000-BNWHFyes (-, 4.8 GB, 4.8 GB) yesyes- -Jake Leiby; jsl_Placenta_16S_2
production/successful180327_M00281_0336_000000000-BNWH5yes (-, 2.9 GB, 2.9 GB) yesyesyes -John Gregg; Stephanie Cherqui; CYS GeneTherapy
production/successful180328_M03249_0328_000000000-BNL6Kyes (-, 3.7 GB, 3.7 GB) yesyesyes -Shantan Reddy; Carl June; CART19 p04409-01, p04409-02
production/successful180406_M00281_0341_000000000-BPPBYyes (-, 2.6 GB, 2.6 GB) yesno- -John Gregg; Blankson; GeneTherapy p169, pES24, pCP31
production/successful180406_M03249_0329_000000000-BPR62yes (7.8 GB, 7.8 GB, 7.7 GB) yesyes- -Jacob Leiby, VK_V4_jsl
production/successful180411_M03249_0330_000000000-BPR5Ryes (3.1 GB, 3.1 GB, 3.1 GB) yesnono -Shantan Reddy; Gijsbers; sinMLV (outsourced library from Belgium)
production/successful180416_M03249_0331_000000000-BPV27yes (5.0 GB, 5.0 GB, 5.0 GB) yesnoyes -John Gregg; Catherine Terrell; SCGT GeneTherapy pSCGT002, pSCGT004
production/successful180427_M03249_0332_000000000-BR7V8yes (3.5 GB, 3.5 GB, 3.5 GB) yesyesno -Shantan Reddy; Simon Lacey; CXCR4 GeneTherapy pC34-CXCR4-01, pC34-CXCR4-02, pC34-CXCR4-04
production/successful180501_M03249_0333_000000000-G1JBVyes (0.8 GB, 0.8 GB, 0.8 GB) yesyesyes -John Gregg; Donald Kohn, David Williams; CGD Cryo Test, pN105, pN104
production/successful180508_M03249_0334_000000000-G1V9Fyes (1.0 GB, 1.0 GB, 1.0 GB) yesyesyes -John Gregg; Donald Kohn, David Williams; CGD GeneTherapy Cryo Test, pN105, pN104
production/successful180510_M03249_0335_000000000-BT7FJyes (5.0 GB, 5.0 GB, 5.0 GB) yesyesyes -John Gregg; David Williams; SCIDn2 GeneTherapy; p00009, p00007, p00008
production/successful180517_M00281_0353_000000000-BT95Nyes (-, 4.8 GB, 4.8 GB) yesno- -Jake Lieby - COMBO_V1V2
production/successful180517_M03249_0336_000000000-BT6H8yes (3.6 GB, 3.6 GB, 3.6 GB) yesno- -Shantan - iGuide Sample Run Set4 and Set5 negative strand
production/successful180521_M03249_0337_000000000-BT8J3yes (5.4 GB, 5.4 GB, 5.4 GB) yesyesyes -WAS Sample Set10, pWAS_UK05, pWAS_UK04, pWAS_UK11
production/successful180524_M03249_0338_000000000-BT7GLyes (5.1 GB, 5.1 GB, 5.1 GB) yesyesyes -WAS pWAS_UK05 and pWAS_UK02
production/successful180607_M03249_0339_000000000-D3KYNyes (0.5 GB, 0.5 GB, 0.5 GB) yesno- -Jacob Leiby - Spark Pilot, 5p1 primers
production/successful180614_M03249_0340_000000000-B6T5Dyes (3.8 GB, 3.8 GB, 3.8 GB) yesno- -Shantan - target assay
production/successful180619_M03249_0341_000000000-BTP2Gyes (3.0 GB, 3.0 GB, 3.0 GB) yesno- -Blankson HIV samples, LentiU3 and CPRU5 primers
production/successful180620_M03249_0342_000000000-G254Wyes (1.3 GB, 1.3 GB, 1.3 GB) yesno- -Partials_6_20_18
production/successful180627_M00281_0364_000000000-D352Kyes (-, 0.4 GB, 0.4 GB) yesno- -Spark2; AAV vector; 3p1v2 primers
production/successful180627_M03249_0343_000000000-BWDLFyes (5.4 GB, 5.4 GB, 5.4 GB) yesyesyes -SCIDn2 p00009, p00008, p00005
production/successful180629_M03249_0344_000000000-BWCP2yes (6.1 GB, 6.1 GB, 6.1 GB) yesno- -Jake Lieby - MICU_ITS2
production/successful180703_M03249_0345_000000000-BNBRGyes (0.0 GB, 0.0 GB, 0.0 GB) yesno- -Jake Lieby - MICU_16S
production/successful180706_M03249_0346_000000000-BWJYPyes (3.2 GB, 3.2 GB, 3.2 GB) yesyesyes -CART19 Sample Set17 p03712-06
production/successful180719_M03249_0347_000000000-G278Gyes (0.3 GB, 0.3 GB, 0.3 GB) yesyes- -pSINSCID_UK01
production/successful180723_M03249_0348_000000000-BWJYYyes (3.2 GB, 3.2 GB, 3.2 GB) yesnono -Vincent Wu, Mike Betts, HIV Provirus Intsites: E2S, CAGN, JAGN, JLRL
production/successful180725_M03249_0349_000000000-BY6FGyes (6.4 GB, 6.4 GB, 6.4 GB) yesno- -Jake Lieby - MICU_16S_3
production/successful180727_M03249_0350_000000000-BWDN5yes (-, 4.0 GB, 4.0 GB) yesyesyes -aiCART Sample Set3 p04511-309, p04511-316
production/successful180730_M03249_0351_000000000-BWK23yes (-, 9.4 GB, 9.4 GB) yesno- -Spark3 set1 5p and 3p_primers
production/successful180801_M03249_0352_000000000-BY86Nyes (-, 3.2 GB, 3.2 GB) yesyesno -pSINSCID_UK01
production/successful180803_M03249_0353_000000000-BY7RCyes (3.6 GB, 3.6 GB, 3.6 GB) yesyes- -sinSCID GTSP 2041-2048
production/successful180815_M03249_0354_000000000-C28RMyes (5.1 GB, 5.1 GB, 5.1 GB) yesnoyes -CGD pB101, pN104, pU103
production/successful180817_M03249_0355_000000000-C29GKyes (3.3 GB, 3.3 GB, 3.3 GB) yesnono -sinMLV outsourced library 2 from Belgium
production/successful180820_M03249_0356_000000000-C2874yes (2.4 GB, 2.4 GB, 2.4 GB) yesno- -Guanxiang WGS - infant stool
production/successful180822_M03249_0357_000000000-C29M4yes (-, 5.6 GB, 5.6 GB) yesno- -iGuide; Sample Run Set6 negative strand
production/successful180824_M03249_0358_000000000-C29H2yes (-, 4.5 GB, 4.5 GB) yesyesyes -UCSD Cystinosis
production/successful180829_M03249_0359_000000000-C29FRyes (4.2 GB, 4.2 GB, 4.2 GB) yesno- -sinSCID p00009
production/successful180831_M03249_0360_000000000-C3CG8yes (-, 4.3 GB, 4.3 GB) yesno- -iGuide sample Run Set7 negative strand
production/successful180905_M03249_0361_000000000-C2J4Byes (-, 5.5 GB, 5.5 GB) yesnoyes -CGD GTSP 2065-2078
production/successful180907_M03249_0362_000000000-BT6MDyes (3.1 GB, 3.1 GB, 3.1 GB) yesno- -Jake Lieby - Collman_16S
production/successful180910_M03249_0363_000000000-C32BVyes (5.4 GB, 5.4 GB, 5.4 GB) yesyesyes -WAS pWAS00002, pWAS00003, pWAS00005
/successful180912_M03249_0364_000000000-C3C5Lyes (3.7 GB, 3.7 GB, 3.7 GB) yesnono -Vincent Wu, HIV Provirus Intsites, U3 and U5, JAGN, GMCB, CAGN, EZS
/successful180920_M03249_0365_000000000-C3CH4yes (7.3 GB, 7.3 GB, 7.3 GB) yesno- -Jake Leiby, Dog_Hemo; AAV vector
/successful180924_M03249_0366_000000000-C3GMNyes (4.2 GB, 4.2 GB, 4.2 GB) yesnoyes -Hayley Raymond, WAS - Boston, GTSP2128-2139
/successful180928_M03249_0367_000000000-C4TGYyes (5.7 GB, 5.7 GB, 5.7 GB) yesnoyes -Shantan Reddy, WAS - Boston, pWAS00002, pWAS00004, pWAS00005, pWAS00006
/successful181001_M03249_0368_000000000-G2NR4yes (0.9 GB, 0.9 GB, 0.9 GB) yesnoyes -Hayley Raymond, CGD, GTSP2093-2099
/successful181005_M03249_0369_000000000-C4THPyes (4.5 GB, 4.5 GB, 4.5 GB) yesnoyes -Hayley Raymond, CYS - final samples before IND
/successful181010_M03249_0370_000000000-C3J8Vyes (5.0 GB, 5.0 GB, 5.0 GB) yesnoyes -Shantan Reddy, WAS - France, pFR01, pFR03, pFR05
production/successful181018_M03249_0371_000000000-BJHBCyes (4.6 GB, 4.6 GB, 4.6 GB) nonono -
production/successful181022_M03249_0372_000000000-D4PV6yes (0.0 GB, 0.0 GB, 0.0 GB) nono- -