Illumina MiSeq data report
Sun Jul 12 19:00:26 EDT 2020

This report details the progress in archiving sequencing data and processing gene therapy sequencing runs.

Sequencing runs that failed are highlighted in red while development runs are highlighted in yellow.
Runs annotated as gene therapy trials report the status of their integration site analyses.

Runs with missing sample data report admin comments when available.

Column details:
data archived (yes/no) sequencing data has been stored in both its primary and secondary archive locations.
The data sizes following this flag denote the data sizes in the data output directory, primary archive and secondary archive.
A dash for the output directory data size means that this data has been removed to conserve space.
Notable size differences between archives are noted in red.
run registered (yes/no) sequencing run event has been registered in the sequencing registry.
samples registered (yes/no) meta data for samples within a run have been registered in the sequencing registry.
intSites called (yes/no) integration site analyses have been performed (gene therapy runs only)
admin administrator notes for runs where the sample meta data has not been archived in the registry.



Run retrieval command: ssh everett@microb120.med.upenn.edu ls -d /media/sequencing/Illumina/*0000* | grep '/19\|/20' 2>/dev/null
Status Run id data archived run registered samples registered intSites called links admin
production/successful190107_M03249_0393_000000000-C5RKHyes (-, 4.7 GB, 4.7 GB) yesno- -Lenka
production/successful190108_M05588_0153_000000000-C7K9Dyes (-, 3.7 GB, 3.7 GB) yesnono -Hayley; Jones HIV
production/successful190110_M03249_0394_000000000-C5GKRyes (-, 4.2 GB, 4.2 GB) yesnoyes -Shantan; Boston WAS
production/successful190111_M03249_0395_000000000-C5RL4yes (-, 5.8 GB, 5.7 GB) yesno- -Lenka
production/successful190114_M03249_0396_000000000-C7KPMyes (-, 3.6 GB, 3.5 GB) yesno- -Jake; Belgian ext lib
production/successful190116_M03249_0397_000000000-C7KD5yes (-, 2.6 GB, 2.6 GB) yesnono -Hayely; Jones HIV
production/successful190118_M03249_0398_000000000-C68YByes (-, 4.6 GB, 4.6 GB) yesnoyes -Shantan; Bostn WAS
production/successful190123_M03249_0399_000000000-C6NT5yes (-, 3.6 GB, 3.6 GB) yesno- -Belgian lib2
production/successful190125_M03249_0400_000000000-C5N8Kyes (-, 7.3 GB, 7.3 GB) yesno- -Oxana run
production/successful190127_M03249_0401_000000000-C8MGJyes (-, 4.9 GB, 4.9 GB) yesnoyes -Boston SCIDn2 p00008, p00009, p00007
production/successful190129_M03249_0402_000000000-BJG4Cyes (-, 0.1 GB, 0.1 GB) yesno- -Laura Su TCR run
production/successful190131_M03249_0403_000000000-C8N9Dyes (-, 0.2 GB, 0.2 GB) yesnono -Vincent HIV run
production/successful190201_M00281_0451_000000000-C8N97yes (-, 3.9 GB, 3.9 GB) yesnono -Vincent HIV run
production/successful190204_M00281_0452_000000000-C8N9Byes (-, 1.1 GB, 1.1 GB) yesno- -iGuide run
production/successful190205_M04734_0148_000000000-C8MG3yes (-, 2.6 GB, 2.6 GB) yesnoyes -Boston SCIDn2 p00003, p00008
production/successful190214_M03249_0404_000000000-C9BCLyes (-, 4.7 GB, 4.7 GB) yesnoyes -CART19 / SCGT
production/successful190221_M03249_0405_000000000-CB77Yyes (-, 5.1 GB, 5.1 GB) yesnoyes -Boston SCIDn2 p00005, p00007, p00009
production/successful190226_M03249_0406_000000000-CB77Ryes (-, 4.7 GB, 4.7 GB) yesnoyes -CXCR4
production/successful190305_M03249_0407_000000000-D5VY8yes (-, 0.2 GB, 0.2 GB) yesno- -Marisol dilutions
production/successful190308_M03249_0408_000000000-CB6YPyes (-, 5.3 GB, 5.3 GB) yesno- -Kayla 16S
production/successful190309_M00281_0461_000000000-CB6RGyes (-, 3.5 GB, 3.5 GB) yesnono -Hayley Siliciano HIV
production/successful190311_M03249_0409_000000000-C8HL8yes (-, 4.2 GB, 4.2 GB) yesnoyes -Lyanna Boston SCID2
production/successful190313_M03249_0410_000000000-CB72Yyes (-, 0.0 GB, 0.0 GB) yesno- -Shantan iGuide set 12 neg strand
production/failed190313_M05588_0174_000000000-CB6HByes (-, 1.0 GB, 1.0 GB) yesno- -Jake iGuid (failed)
production/successful190315_M03249_0411_000000000-CC56Myes (-, 5.3 GB, 5.3 GB) yesno- -Shantan iGuide set 12
production/successful190315_M05588_0175_000000000-CCBDDyes (-, 2.2 GB, 2.2 GB) yesno- -Jake iGuide PACE
production/successful190320_M03249_0412_000000000-CC6F2yes (-, 3.2 GB, 3.2 GB) yesnono -Bar HIV
production/successful190322_M03249_0413_000000000-C7W9Yyes (-, 5.2 GB, 5.2 GB) yesno- -Lenka run
production/successful190325_M03249_0414_000000000-C9F24yes (-, 6.1 GB, 6.1 GB) yesno- -Lenka run
production/failed190327_M03249_0415_000000000-C8T2Wyes (-, 0.9 GB, 0.9 GB) yesnono -Lyanna SCGT (failed)
production/successful190329_M03249_0416_000000000-CC3FDyes (-, 3.4 GB, 3.4 GB) yesnoyes -Lyanna SCGT
production/failed190401_M00281_0473_000000000-CD2FLyes (-, 1.1 GB, 1.1 GB) yesnono -Hayley CYS (failed)
production/failed190406_M00281_0477_000000000-CCNHTyes (-, 1.1 GB, 1.1 GB) yesnono -Hayley CYS (failed)
production/successful190408_M03249_0418_000000000-CD3DKyes (-, 1.7 GB, 1.7 GB) yesno- -PhiX diagnostic
production/successful190410_M03249_0419_000000000-CD2B7yes (-, 3.6 GB, 3.6 GB) yesnoyes -Shantan CYS
production/successful190412_M00281_0480_000000000-CGWM8yes (-, 2.5 GB, 2.5 GB) yesno- -KaylaBarekat NSAID
production/successful190412_M03249_0420_000000000-CGBVGyes (-, 4.3 GB, 4.3 GB) yesno- -Shantan iGuide set 13
production/successful190415_M03249_0421_000000000-CCB8Vyes (-, 2.2 GB, 2.2 GB) yesnoyes -Jake CGD
production/successful190417_M03249_0422_000000000-CDPM2yes (-, 4.8 GB, 4.8 GB) yesnono -Lyanna CCXR4
production/successful190419_M03249_0423_000000000-CC6FHyes (-, 4.6 GB, 4.6 GB) yesnoyes -Lyanna CGD
production/successful190423_M00281_0483_000000000-CCY9Fyes (-, 3.9 GB, 3.9 GB) yesnoyes -Hayley CYS and CGD
production/successful190423_M03249_0424_000000000-CD2K3yes (-, 4.9 GB, 4.9 GB) yesnoyes -Hayley CYS
production/successful190425_M03249_0425_000000000-CGVYPyes (-, 4.6 GB, 4.6 GB) yesnono -Jake CGD
production/successful190429_M03249_0426_000000000-CGWNWyes (-, 5.2 GB, 5.2 GB) yesno- -Shantan iGuide O Rourke
production/successful190501_M03249_0427_000000000-CGMRMyes (-, 4.6 GB, 4.6 GB) yesnoyes -Lyanna BostonSCIDn2
production/successful190503_M03249_0428_000000000-C9CPByes (-, 0.3 GB, 0.3 GB) yesno- -Lenka DO mice
production/successful190505_M03249_0429_000000000-C9F55yes (-, 5.2 GB, 5.2 GB) yesno- -Lenka DO mice 2
production/successful190507_M04734_0166_000000000-CGPG8yes (-, 4.0 GB, 4.0 GB) yesnoyes -Lyanna Boston WAS
production/successful190508_M03249_0430_000000000-CGFV8yes (-, 0.0 GB, 0.0 GB) yesno- -Kayla 16S
production/successful190511_M03249_0431_000000000-CG2M7yes (-, 4.1 GB, 4.1 GB) yesnoyes -Hayley SCID1
production/successful190514_M03249_0432_000000000-D66DRyes (-, 0.3 GB, 0.3 GB) yesno- -Aoife AD_HUPCSF 16S
production/successful190515_M03249_0433_000000000-G3W95yes (-, 1.3 GB, 1.3 GB) yesnoyes -Lyanna Boston WAS
production/successful190517_M03249_0434_000000000-CFPFPyes (-, 5.0 GB, 5.0 GB) yesnoyes -Hayley Boston SCID2
production/successful190521_M03249_0435_000000000-D669Ryes (-, 0.2 GB, 0.2 GB) yesno- -Kayla
production/successful190522_M03249_0436_000000000-CGVYRyes (-, 6.6 GB, 6.6 GB) yesnoyes -Lyanna CART
production/successful190525_M00281_0495_000000000-CGY8Fyes (-, 4.4 GB, 4.4 GB) yesnoyes -CART19
production/successful190529_M03249_0437_000000000-CGLJ3yes (-, 4.9 GB, 4.9 GB) yesno- -Kayla
production/successful190531_M03249_0438_000000000-CGW2Jyes (-, 0.2 GB, 0.2 GB) yesno- -Shantan iGuide (fail)
production/successful190603_M05588_0204_000000000-CFPFLyes (-, 4.1 GB, 4.1 GB) yesno- -Shantan iGuide
production/successful190605_M05588_0205_000000000-CGY99yes (-, 3.8 GB, 3.8 GB) yesnoyes -CART PSMA
production/successful190612_M03249_0439_000000000-CH689yes (-, 5.1 GB, 5.1 GB) yesno- -iGuide
production/successful190620_M03249_0440_000000000-CH569yes (-, 0.1 GB, 0.1 GB) yesnono -iGuide
production/successful190624_M03249_0441_000000000-CH27Yyes (-, 3.8 GB, 3.8 GB) yesnoyes -CART19
production/successful190705_M03249_0442_000000000-C9CDVyes (-, 5.6 GB, 5.6 GB) yesno- -Lenka
production/successful190710_M03249_0443_000000000-CH4NLyes (-, 5.2 GB, 5.2 GB) yesno- -iGuide
production/successful190722_M03249_0444_000000000-CJGGLyes (-, 3.7 GB, 3.7 GB) yesno- -iGuide
production/successful190727_M03249_0445_000000000-C9DV7yes (-, 0.1 GB, 0.1 GB) yesno- -Lenka
production/successful190812_M03249_0001_000000000-CJHFByes (-, 4.4 GB, 4.4 GB) yesnoyes -CART19_CLL
production/successful190814_M03249_0002_000000000-CJHG7yes (-, 5.0 GB, 5.0 GB) yesnoyes -CART19_CLL
production/successful190816_M03249_0003_000000000-CJHFKyes (-, 4.4 GB, 4.4 GB) yesnoyes -CART19_CLL
production/successful190819_M03249_0004_000000000-CJHGTyes (-, 3.5 GB, 3.5 GB) yesnoyes -CYS
production/failed190822_M03249_0005_000000000-CLHM7yes (-, 4.5 GB, 4.5 GB) yesnono -Wrong seq primer used.
production/successful190830_M03249_0006_000000000-CFRCHyes (-, 3.0 GB, 3.0 GB) yesno- -Marisol, Rivella, Linus Nextera
production/successful190903_M03249_0007_000000000-CH493yes (-, 2.5 GB, 2.4 GB) yesnono -CD4zeta - run 1
production/successful190905_M03249_0008_000000000-CLHMCyes (-, 4.2 GB, 4.2 GB) yesnono -HIV Siliciano
production/successful190910_M03249_0009_000000000-CLHJ9yes (-, 4.0 GB, 4.0 GB) yesnoyes -CD4zeta - run 2
production/successful190912_M03249_0010_000000000-CKNGKyes (-, 2.3 GB, 2.3 GB) yesnono -HIV Betts
production/successful190914_M03249_0011_000000000-CLGF5yes (-, 4.0 GB, 4.0 GB) yesnoyes -CART19
production/successful190916_M03249_0012_000000000-G4BBTyes (-, 0.3 GB, 0.3 GB) yesno- -K9 AAV M50 frags
production/successful190920_M03249_0013_000000000-CNJ7Hyes (-, 2.2 GB, 2.2 GB) yesnono -HIV Betts
production/successful190923_M03249_0014_000000000-CLGDPyes (-, 1.1 GB, 1.1 GB) yesnono -HIV Siliciano
production/successful190925_M03249_0015_000000000-CH3JHyes (-, 4.7 GB, 4.7 GB) yesnoyes -SCGT
production/successful190926_M00281_0536_000000000-CN95Pyes (-, 2.6 GB, 2.6 GB) yesnono -HIV Siliciano
production/successful190927_M03249_0016_000000000-CJFRWyes (-, 4.9 GB, 4.9 GB) yesnoyes -SCGT
production/successful190929_M03249_0017_000000000-C9DMMyes (-, 5.4 GB, 5.4 GB) yesno- -Lenka
production/successful191002_M03249_0018_000000000-CN6GByes (5.2 GB, 5.2 GB, 5.2 GB) yesno- -StGemme transposons
production/successful191004_M03249_0019_000000000-CN7YYyes (3.7 GB, 3.7 GB, 3.7 GB) yesnono -Pascha HIV Siliciano
production/successful191011_M03249_0020_000000000-CN99Tyes (4.0 GB, 4.0 GB, 4.0 GB) yesnoyes -Shantan Rivella GT
production/successful191014_M03249_0021_000000000-CP48Nyes (0.2 GB, 0.2 GB, 0.2 GB) yesnono -Hayley Cys
production/successful191017_M03249_0022_000000000-CPG6Byes (4.7 GB, 4.7 GB, 4.7 GB) yesnoyes -Pascha CART19_CLL_GeneTherapy
production/successful191021_M03249_0023_000000000-G4HR4yes (1.4 GB, 1.4 GB, 1.4 GB) yesnoyes -Hayley CYS
production/successful191022_M03249_0024_000000000-CP7P4yes (5.4 GB, 5.4 GB, 5.4 GB) yesnoyes -Shantan CART19 CLL
production/successful191025_M03249_0025_000000000-CPJ4Vyes (3.1 GB, 3.1 GB, 3.1 GB) yesnono -Pashcha Siliciano HIV
production/successful191101_M03249_0026_000000000-CP8MVyes (5.3 GB, 5.3 GB, 5.3 GB) yesnoyes -Shantan CART19 CLL
production/successful191104_M03249_0027_000000000-CP8NLyes (4.5 GB, 4.5 GB, 4.5 GB) yesnoyes -Pascha CAR19 ALL/CLL
production/successful191108_M00281_0556_000000000-CPCVMyes (-, 3.6 GB, 3.6 GB) yesnono -Hayley - HIV Jones / Blankson
production/successful191108_M03249_0028_000000000-CPCTVyes (5.6 GB, 5.6 GB, 5.6 GB) yesno- -Shantan - iGuide; Sample Run Set19 negative strand
production/successful191112_M03249_0029_000000000-CP48Tyes (4.0 GB, 4.0 GB, 4.0 GB) yesnono -Dominique Van Looveren library
production/successful191115_M03249_0030_000000000-CRT5Dyes (0.0 GB, 0.0 GB, 0.0 GB) yesno- -Aoife - DogAAVPCR, failed
production/successful191118_M03249_0031_000000000-CNC5Jyes (1.5 GB, 1.5 GB, 1.5 GB) yesno- -Vincent Wu - ND497_PBMC_citeseq
production/successful191120_M03249_0032_000000000-CRWC5yes (0.1 GB, 0.1 GB, 0.1 GB) yesno- -Hayley - DogAAVPCR try 2
production/successful191122_M03249_0033_000000000-CRMP5yes (5.2 GB, 5.2 GB, 5.2 GB) yesno- -Dog AAV
production/successful191125_M03249_0034_000000000-G4NBDyes (1.5 GB, 1.5 GB, 1.5 GB) yesnoyes -Sadelain Bthal
production/successful191202_M03249_0035_000000000-CP49Cyes (3.9 GB, 3.9 GB, 3.7 GB) yesnoyes -CART19_CLL
production/successful191204_M03249_0036_000000000-CRWCRyes (4.4 GB, 4.4 GB, 4.4 GB) yesnoyes -CGD
production/successful191210_M03249_0037_000000000-CV6KPyes (6.1 GB, 6.1 GB, 6.1 GB) yesnoyes -SCID3
production/successful191213_M03249_0038_000000000-CV7MByes (6.2 GB, 6.2 GB, 6.2 GB) yesnoyes -SCID3
production/successful191217_M03249_0039_000000000-G4R7Jyes (1.6 GB, 1.6 GB, 1.6 GB) yesno- -iGuide; Sample Run Set20 negative strand
production/successful191218_M03249_0040_000000000-CRT4Tyes (5.1 GB, 5.1 GB, 5.1 GB) yesno- -Vincent Wu; Mike Betts; HIV int7; D-F
production/successful191219_M03249_0041_000000000-CMY27yes (2.7 GB, 2.7 GB, 2.7 GB) yesno- -Vincent Wu; ND519_PBMC_citeseq
production/successful191220_M03249_0042_000000000-CRRWTyes (5.4 GB, 5.4 GB, 5.4 GB) yesno- -Vincent Wu; Mike Betts; HIV int7; G-I
production/successful191223_M03249_0043_000000000-CV6KCyes (5.0 GB, 5.0 GB, 5.0 GB) yesnono -intsite_HIV_Penn_ODoherty_2314to2319_3422to3429_122319
production/successful200103_M03249_0044_000000000-G4PJFyes (1.1 GB, 1.1 GB, 1.1 GB) yesnoyes -Pascha Hokama; intsites; SCID3
production/successful200106_M03249_0045_000000000-G4RDLyes (1.5 GB, 1.5 GB, 1.5 GB) yesnono -Pascha Hokama; intsites; Beta Thalassemia
production/successful200107_M03249_0046_000000000-G4RCLyes (1.0 GB, 1.0 GB, 1.0 GB) yesnoyes -Shantan Reddy; Marina Cavazzana; intsites; SCIDn1 GeneTherapy Sample Set2
production/successful200113_M03249_0047_000000000-CV7NFyes (3.9 GB, 3.9 GB, 3.9 GB) yesnono -intsite_HIV_Penn_ODoherty_3445to3454_01132
production/successful200117_M00281_0574_000000000-CTL26yes (-, 3.7 GB, 3.7 GB) yesno- -HemophiliaA_Wilcox
production/successful200117_M03249_0048_000000000-CV7NPyes (5.2 GB, 5.2 GB, 5.2 GB) yesnoyes -Shantan Reddy; Rick Bushman; intsites; CART19_NYCE GeneTherapy
production/successful200128_M03249_0049_000000000-CV6JWyes (5.7 GB, 5.7 GB, 5.7 GB) yesno- -Shantan Reddy; iGuide; Sample Run Set21 negative strand
production/successful200131_M03249_0050_000000000-CPHC6yes (5.3 GB, 5.3 GB, 5.3 GB) yesno- -Lenka_forSemir_PiebaldCanada_Chop_Penn_GFmonocolonization
production/successful200203_M03249_0051_000000000-CY7JByes (4.1 GB, 4.1 GB, 4.1 GB) yesno- -Thrasher WAS
production/successful200205_M03249_0052_000000000-CY765yes (3.1 GB, 3.1 GB, 3.1 GB) yesnono -Shantan Reddy; Naomi Aronson; intsites; CD4zeta
production/successful200207_M03249_0053_000000000-CY6R2yes (3.4 GB, 3.4 GB, 3.4 GB) yesnono -Hayley; intsite_HIV_Penn_ODoherty_3455to3463_020720
production/successful200214_M03249_0054_000000000-G4R7Lyes (1.2 GB, 1.2 GB, 1.2 GB) yesnoyes -Shantan Reddy; David Williams; intsites; SCD GeneTherapy
production/successful200220_M03249_0055_000000000-CY3F2yes (4.8 GB, 4.8 GB, 4.8 GB) yesno- -Pascha; insite_WAS_set2_ThrasherAndCavazzana
production/successful200225_M03249_0056_000000000-CY6RPyes (6.2 GB, 6.2 GB, 6.2 GB) yesnoyes -Shantan Reddy; Adrian Thrasher, Emmanuelle Six; intsites; WAS GeneTherapy Sample Set16
production/successful200228_M03249_0057_000000000-CY6RKyes (4.3 GB, 4.3 GB, 4.3 GB) yesnono -Hayley; intsite_HIV_Penn_Bushman_JohnsHopkins_Blankson
production/successful200303_M03249_0058_000000000-CY7CHyes (4.7 GB, 4.7 GB, 4.7 GB) yesnono -Pascha; intsite_HIV_Jones_3588to3593_03032020
production/successful200305_M03249_0059_000000000-CMYV5yes (1.3 GB, 1.3 GB, 1.3 GB) yesno- -Vincent Wu; ND528_PBMC_citeseq
production/successful200313_M03249_0060_000000000-G5FKByes (1.1 GB, 1.1 GB, 1.1 GB) yesnono -Shantan Reddy; Stephanie Cherqui; intsites; CYS
production/successful200403_M03249_0061_000000000-G5JMFyes (0.0 GB, 0.0 GB, 0.0 GB) nono- -
production/successful200404_M03249_0062_000000000-G5JW3yes (0.9 GB, 0.9 GB, 0.9 GB) nono- -
production/successful200507_M03249_0063_000000000-J3BF6yes (1.8 GB, 1.8 GB, 1.8 GB) nono- -
production/successful200508_M03249_0064_000000000-G5GLHyes (0.6 GB, 0.6 GB, 0.6 GB) nono- -
production/successful200518_M03249_0065_000000000-J37K3yes (4.9 GB, 7.6 GB, 7.6 GB) nono- -
production/successful200527_M03249_0066_000000000-J3R26yes (6.2 GB, 7.6 GB, 7.6 GB) nono- -
production/successful200609_M03249_0067_000000000-J37MLyes (9.3 GB, 10.6 GB, 10.6 GB) nono- -
production/successful200613_M03249_0068_000000000-J37GKyes (4.3 GB, 6.3 GB, 6.3 GB) nono- -
production/successful200618_M03249_0069_000000000-J3NJJyes (4.0 GB, 4.1 GB, 4.1 GB) nono- -
production/successful200626_M03249_0070_000000000-CRD4Jyes (3.0 GB, 3.0 GB, 3.0 GB) nono- -
production/successful200629_M03249_0071_000000000-J32C3yes (1.9 GB, 1.9 GB, 1.9 GB) nono- -
production/successful200703_M03249_0072_000000000-J77FGyes (4.0 GB, 4.0 GB, 4.0 GB) nono- -
production/successful200707_M03249_0073_000000000-G5JLDyes (0.7 GB, 0.7 GB, 0.7 GB) nonono -
register_run.py --file=/media/sequencing/Illumina/200403_M03249_0061_000000000-G5JMF --date=2020-04-03 --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: SARS_COV2_E6_CCLB1_04032020 | description: SARS_COV2_E6_CCLB1_04032020' register_run.py --file=/media/sequencing/Illumina/200404_M03249_0062_000000000-G5JW3 --date=2020-04-03 --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: SARS_COV2_E6_CCLB1_04032020 | description: SARS_COV2_E6_CCLB1_04032020' register_run.py --file=/media/sequencing/Illumina/200507_M03249_0063_000000000-J3BF6 --date=2020-05-07 --type=Illumina-MiSeq --kit='TruSeq Nano DNA' --comment='investigator: Vincent Wu | experiment: ND542_PBMC_citeseq' register_run.py --file=/media/sequencing/Illumina/200508_M03249_0064_000000000-G5GLH --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: RedondoSARS2_05082020 | description: RedondoSARS2_05082020' register_run.py --file=/media/sequencing/Illumina/200518_M03249_0065_000000000-J37K3 --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_SARS2trial1_05182020 | description: POLAR_SARS2trial1_05182020' register_run.py --file=/media/sequencing/Illumina/200527_M03249_0066_000000000-J3R26 --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set2_05232020 | description: POLAR_Set2_05232020' register_run.py --file=/media/sequencing/Illumina/200609_M03249_0067_000000000-J37ML --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set3_05232020 | description: POLAR_Set2_05232020' register_run.py --file=/media/sequencing/Illumina/200613_M03249_0068_000000000-J37GK --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set4_06132020 | description: POLAR_Set4_06132020' register_run.py --file=/media/sequencing/Illumina/200618_M03249_0069_000000000-J3NJJ --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set5_06182020 | description: POLAR_Set5_06182020' register_run.py --file=/media/sequencing/Illumina/200626_M03249_0070_000000000-CRD4J --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set6_06262020 | description: POLAR_Set6_06262020' register_run.py --file=/media/sequencing/Illumina/200629_M03249_0071_000000000-J32C3 --date=2020-06-29 --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Christopher Gu | experiment: 20200629_cfDNA_seq | description: 20200629_cfDNA_seq' register_run.py --file=/media/sequencing/Illumina/200703_M03249_0072_000000000-J77FG --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set7_07032020 | description: POLAR_Set7_07032020' register_run.py --file=/media/sequencing/Illumina/200707_M03249_0073_000000000-G5JLD --date=2020-07-07 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Hayley Raymond | experiment: intsite_CART19_Penn_Lacey_GTSP3576to3581_070720'