Illumina data

Illumina MiSeq data report
Tue Jan 19 07:00:02 EST 2021

This report details the progress in archiving sequencing data and processing gene therapy sequencing runs.

Sequencing runs that failed are highlighted in red while development runs are highlighted in yellow.
Runs annotated as gene therapy trials report the status of their integration site analyses.

Runs with missing sample data report admin comments when available.

Column details:

data archived		(yes/no) sequencing data has been stored in both its primary and secondary archive locations. The data sizes following this flag denote the data sizes in the data output directory, primary archive and secondary archive. A dash for the output directory data size means that this data has been removed to conserve space. Notable size differences between archives are noted in red.
run registered		(yes/no) sequencing run event has been registered in the sequencing registry.
samples registered		(yes/no) meta data for samples within a run have been registered in the sequencing registry.
intSites called		(yes/no) integration site analyses have been performed (gene therapy runs only)
admin		administrator notes for runs where the sample meta data has not been archived in the registry.

Run retrieval command: ssh everett@microb120.med.upenn.edu ls -d /media/sequencing/Illumina/*0000* | grep '/19\|/20' 2>/dev/null

Status

Run id

data archived

run registered

samples registered

intSites called

links

admin

production/successful

190107_M03249_0393_000000000-C5RKH

yes (-, 4.7 GB, 4.7 GB)

yes

Lenka

production/successful

190108_M05588_0153_000000000-C7K9D

yes (-, 3.7 GB, 3.7 GB)

yes

Hayley; Jones HIV

production/successful

190110_M03249_0394_000000000-C5GKR

yes (-, 4.2 GB, 4.2 GB)

yes

Shantan; Boston WAS

production/successful

190111_M03249_0395_000000000-C5RL4

yes (-, 5.8 GB, 5.7 GB)

yes

Lenka

production/successful

190114_M03249_0396_000000000-C7KPM

yes (-, 3.6 GB, 3.5 GB)

yes

Jake; Belgian ext lib

production/successful

190116_M03249_0397_000000000-C7KD5

yes (-, 2.6 GB, 2.6 GB)

yes

Hayely; Jones HIV

production/successful

190118_M03249_0398_000000000-C68YB

yes (-, 4.6 GB, 4.6 GB)

yes

Shantan; Bostn WAS

production/successful

190123_M03249_0399_000000000-C6NT5

yes (-, 3.6 GB, 3.6 GB)

yes

Belgian lib2

production/successful

190125_M03249_0400_000000000-C5N8K

yes (-, 7.3 GB, 7.3 GB)

yes

Oxana run

production/successful

190127_M03249_0401_000000000-C8MGJ

yes (-, 4.9 GB, 4.9 GB)

yes

Boston SCIDn2 p00008, p00009, p00007

production/successful

190129_M03249_0402_000000000-BJG4C

yes (-, 0.1 GB, 0.1 GB)

yes

Laura Su TCR run

production/successful

190131_M03249_0403_000000000-C8N9D

yes (-, 0.2 GB, 0.2 GB)

yes

Vincent HIV run

production/successful

190201_M00281_0451_000000000-C8N97

yes (-, 3.9 GB, 3.9 GB)

yes

Vincent HIV run

production/successful

190204_M00281_0452_000000000-C8N9B

yes (-, 1.1 GB, 1.1 GB)

yes

iGuide run

production/successful

190205_M04734_0148_000000000-C8MG3

yes (-, 2.6 GB, 2.6 GB)

yes

Boston SCIDn2 p00003, p00008

production/successful

190214_M03249_0404_000000000-C9BCL

yes (-, 4.7 GB, 4.7 GB)

yes

CART19 / SCGT

production/successful

190221_M03249_0405_000000000-CB77Y

yes (-, 5.1 GB, 5.1 GB)

yes

Boston SCIDn2 p00005, p00007, p00009

production/successful

190226_M03249_0406_000000000-CB77R

yes (-, 4.7 GB, 4.7 GB)

yes

CXCR4

production/successful

190305_M03249_0407_000000000-D5VY8

yes (-, 0.2 GB, 0.2 GB)

yes

Marisol dilutions

production/successful

190308_M03249_0408_000000000-CB6YP

yes (-, 5.3 GB, 5.3 GB)

yes

Kayla 16S

production/successful

190309_M00281_0461_000000000-CB6RG

yes (-, 3.5 GB, 3.5 GB)

yes

Hayley Siliciano HIV

production/successful

190311_M03249_0409_000000000-C8HL8

yes (-, 4.2 GB, 4.2 GB)

yes

Lyanna Boston SCID2

production/successful

190313_M03249_0410_000000000-CB72Y

yes (-, 0.0 GB, 0.0 GB)

yes

Shantan iGuide set 12 neg strand

production/failed

190313_M05588_0174_000000000-CB6HB

yes (-, 1.0 GB, 1.0 GB)

yes

Jake iGuid (failed)

production/successful

190315_M03249_0411_000000000-CC56M

yes (-, 5.3 GB, 5.3 GB)

yes

Shantan iGuide set 12

production/successful

190315_M05588_0175_000000000-CCBDD

yes (-, 2.2 GB, 2.2 GB)

yes

Jake iGuide PACE

production/successful

190320_M03249_0412_000000000-CC6F2

yes (-, 3.2 GB, 3.2 GB)

yes

Bar HIV

production/successful

190322_M03249_0413_000000000-C7W9Y

yes (-, 5.2 GB, 5.2 GB)

yes

Lenka run

production/successful

190325_M03249_0414_000000000-C9F24

yes (-, 6.1 GB, 6.1 GB)

yes

Lenka run

production/failed

190327_M03249_0415_000000000-C8T2W

yes (-, 0.9 GB, 0.9 GB)

yes

Lyanna SCGT (failed)

production/successful

190329_M03249_0416_000000000-CC3FD

yes (-, 3.4 GB, 3.4 GB)

yes

Lyanna SCGT

production/failed

190401_M00281_0473_000000000-CD2FL

yes (-, 1.1 GB, 1.1 GB)

yes

Hayley CYS (failed)

production/failed

190406_M00281_0477_000000000-CCNHT

yes (-, 1.1 GB, 1.1 GB)

yes

Hayley CYS (failed)

production/successful

190408_M03249_0418_000000000-CD3DK

yes (-, 1.7 GB, 1.7 GB)

yes

PhiX diagnostic

production/successful

190410_M03249_0419_000000000-CD2B7

yes (-, 3.6 GB, 3.6 GB)

yes

Shantan CYS

production/successful

190412_M00281_0480_000000000-CGWM8

yes (-, 2.5 GB, 2.5 GB)

yes

KaylaBarekat NSAID

production/successful

190412_M03249_0420_000000000-CGBVG

yes (-, 4.3 GB, 4.3 GB)

yes

Shantan iGuide set 13

production/successful

190415_M03249_0421_000000000-CCB8V

yes (-, 2.2 GB, 2.2 GB)

yes

Jake CGD

production/successful

190417_M03249_0422_000000000-CDPM2

yes (-, 4.8 GB, 4.8 GB)

yes

Lyanna CCXR4

production/successful

190419_M03249_0423_000000000-CC6FH

yes (-, 4.6 GB, 4.6 GB)

yes

Lyanna CGD

production/successful

190423_M00281_0483_000000000-CCY9F

yes (-, 3.9 GB, 3.9 GB)

yes

Hayley CYS and CGD

production/successful

190423_M03249_0424_000000000-CD2K3

yes (-, 4.9 GB, 4.9 GB)

yes

Hayley CYS

production/successful

190425_M03249_0425_000000000-CGVYP

yes (-, 4.6 GB, 4.6 GB)

yes

Jake CGD

production/successful

190429_M03249_0426_000000000-CGWNW

yes (-, 5.2 GB, 5.2 GB)

yes

Shantan iGuide O Rourke

production/successful

190501_M03249_0427_000000000-CGMRM

yes (-, 4.6 GB, 4.6 GB)

yes

Lyanna BostonSCIDn2

production/successful

190503_M03249_0428_000000000-C9CPB

yes (-, 0.3 GB, 0.3 GB)

yes

Lenka DO mice

production/successful

190505_M03249_0429_000000000-C9F55

yes (-, 5.2 GB, 5.2 GB)

yes

Lenka DO mice 2

production/successful

190507_M04734_0166_000000000-CGPG8

yes (-, 4.0 GB, 4.0 GB)

yes

Lyanna Boston WAS

production/successful

190508_M03249_0430_000000000-CGFV8

yes (-, 0.0 GB, 0.0 GB)

yes

Kayla 16S

production/successful

190511_M03249_0431_000000000-CG2M7

yes (-, 4.1 GB, 4.1 GB)

yes

Hayley SCID1

production/successful

190514_M03249_0432_000000000-D66DR

yes (-, 0.3 GB, 0.3 GB)

yes

Aoife AD_HUPCSF 16S

production/successful

190515_M03249_0433_000000000-G3W95

yes (-, 1.3 GB, 1.3 GB)

yes

Lyanna Boston WAS

production/successful

190517_M03249_0434_000000000-CFPFP

yes (-, 5.0 GB, 5.0 GB)

yes

Hayley Boston SCID2

production/successful

190521_M03249_0435_000000000-D669R

yes (-, 0.2 GB, 0.2 GB)

yes

Kayla

production/successful

190522_M03249_0436_000000000-CGVYR

yes (-, 6.6 GB, 6.6 GB)

yes

Lyanna CART

production/successful

190525_M00281_0495_000000000-CGY8F

yes (-, 4.4 GB, 4.4 GB)

yes

CART19

production/successful

190529_M03249_0437_000000000-CGLJ3

yes (-, 4.9 GB, 4.9 GB)

yes

Kayla

production/successful

190531_M03249_0438_000000000-CGW2J

yes (-, 0.2 GB, 0.2 GB)

yes

Shantan iGuide (fail)

production/successful

190603_M05588_0204_000000000-CFPFL

yes (-, 4.1 GB, 4.1 GB)

yes

Shantan iGuide

production/successful

190605_M05588_0205_000000000-CGY99

yes (-, 3.8 GB, 3.8 GB)

yes

CART PSMA

production/successful

190612_M03249_0439_000000000-CH689

yes (-, 5.1 GB, 5.1 GB)

yes

iGuide

production/successful

190620_M03249_0440_000000000-CH569

yes (-, 0.1 GB, 0.1 GB)

yes

iGuide

production/successful

190624_M03249_0441_000000000-CH27Y

yes (-, 3.8 GB, 3.8 GB)

yes

CART19

production/successful

190705_M03249_0442_000000000-C9CDV

yes (-, 5.6 GB, 5.6 GB)

yes

Lenka

production/successful

190710_M03249_0443_000000000-CH4NL

yes (-, 5.2 GB, 5.2 GB)

yes

iGuide

production/successful

190722_M03249_0444_000000000-CJGGL

yes (-, 3.7 GB, 3.7 GB)

yes

iGuide

production/successful

190727_M03249_0445_000000000-C9DV7

yes (-, 0.1 GB, 0.1 GB)

yes

Lenka

production/successful

190812_M03249_0001_000000000-CJHFB

yes (-, 4.4 GB, 4.4 GB)

yes

CART19_CLL

production/successful

190814_M03249_0002_000000000-CJHG7

yes (-, 5.0 GB, 5.0 GB)

yes

CART19_CLL

production/successful

190816_M03249_0003_000000000-CJHFK

yes (-, 4.4 GB, 4.4 GB)

yes

CART19_CLL

production/successful

190819_M03249_0004_000000000-CJHGT

yes (-, 3.5 GB, 3.5 GB)

yes

CYS

production/failed

190822_M03249_0005_000000000-CLHM7

yes (-, 4.5 GB, 4.5 GB)

yes

Wrong seq primer used.

production/successful

190830_M03249_0006_000000000-CFRCH

yes (-, 3.0 GB, 3.0 GB)

yes

Marisol, Rivella, Linus Nextera

production/successful

190903_M03249_0007_000000000-CH493

yes (-, 2.5 GB, 2.4 GB)

yes

CD4zeta - run 1

production/successful

190905_M03249_0008_000000000-CLHMC

yes (-, 4.2 GB, 4.2 GB)

yes

HIV Siliciano

production/successful

190910_M03249_0009_000000000-CLHJ9

yes (-, 4.0 GB, 4.0 GB)

yes

CD4zeta - run 2

production/successful

190912_M03249_0010_000000000-CKNGK

yes (-, 2.3 GB, 2.3 GB)

yes

HIV Betts

production/successful

190914_M03249_0011_000000000-CLGF5

yes (-, 4.0 GB, 4.0 GB)

yes

CART19

production/successful

190916_M03249_0012_000000000-G4BBT

yes (-, 0.3 GB, 0.3 GB)

yes

K9 AAV M50 frags

production/successful

190920_M03249_0013_000000000-CNJ7H

yes (-, 2.2 GB, 2.2 GB)

yes

HIV Betts

production/successful

190923_M03249_0014_000000000-CLGDP

yes (-, 1.1 GB, 1.1 GB)

yes

HIV Siliciano

production/successful

190925_M03249_0015_000000000-CH3JH

yes (-, 4.7 GB, 4.7 GB)

yes

SCGT

production/successful

190926_M00281_0536_000000000-CN95P

yes (-, 2.6 GB, 2.6 GB)

yes

HIV Siliciano

production/successful

190927_M03249_0016_000000000-CJFRW

yes (-, 4.9 GB, 4.9 GB)

yes

SCGT

production/successful

190929_M03249_0017_000000000-C9DMM

yes (-, 5.4 GB, 5.4 GB)

yes

Lenka

production/successful

191002_M03249_0018_000000000-CN6GB

yes (-, 5.2 GB, 5.2 GB)

yes

StGemme transposons

production/successful

191004_M03249_0019_000000000-CN7YY

yes (-, 3.7 GB, 3.7 GB)

yes

Pascha HIV Siliciano

production/successful

191011_M03249_0020_000000000-CN99T

yes (-, 4.0 GB, 4.0 GB)

yes

Shantan Rivella GT

production/successful

191014_M03249_0021_000000000-CP48N

yes (-, 0.2 GB, 0.2 GB)

yes

Hayley Cys

production/successful

191017_M03249_0022_000000000-CPG6B

yes (-, 4.7 GB, 4.7 GB)

yes

Pascha CART19_CLL_GeneTherapy

production/successful

191021_M03249_0023_000000000-G4HR4

yes (-, 1.4 GB, 1.4 GB)

yes

Hayley CYS

production/successful

191022_M03249_0024_000000000-CP7P4

yes (-, 5.4 GB, 5.4 GB)

yes

Shantan CART19 CLL

production/successful

191025_M03249_0025_000000000-CPJ4V

yes (3.1 GB, 3.1 GB, 3.1 GB)

yes

Pashcha Siliciano HIV

production/successful

191101_M03249_0026_000000000-CP8MV

yes (-, 5.3 GB, 5.3 GB)

yes

Shantan CART19 CLL

production/successful

191104_M03249_0027_000000000-CP8NL

yes (4.5 GB, 4.5 GB, 4.5 GB)

yes

Pascha CAR19 ALL/CLL

production/successful

191108_M00281_0556_000000000-CPCVM

yes (-, 3.6 GB, 3.6 GB)

yes

Hayley - HIV Jones / Blankson

production/successful

191108_M03249_0028_000000000-CPCTV

yes (5.6 GB, 5.6 GB, 5.6 GB)

yes

Shantan - iGuide; Sample Run Set19 negative strand

production/successful

191112_M03249_0029_000000000-CP48T

yes (4.0 GB, 4.0 GB, 4.0 GB)

yes

Dominique Van Looveren library

production/successful

191115_M03249_0030_000000000-CRT5D

yes (0.0 GB, 0.0 GB, 0.0 GB)

yes

Aoife - DogAAVPCR, failed

production/successful

191118_M03249_0031_000000000-CNC5J

yes (1.5 GB, 1.5 GB, 1.5 GB)

yes

Vincent Wu - ND497_PBMC_citeseq

production/successful

191120_M03249_0032_000000000-CRWC5

yes (0.1 GB, 0.1 GB, 0.1 GB)

yes

Hayley - DogAAVPCR try 2

production/successful

191122_M03249_0033_000000000-CRMP5

yes (5.2 GB, 5.2 GB, 5.2 GB)

yes

Dog AAV

production/successful

191125_M03249_0034_000000000-G4NBD

yes (1.5 GB, 1.5 GB, 1.5 GB)

yes

Sadelain Bthal

production/successful

191202_M03249_0035_000000000-CP49C

yes (3.9 GB, 3.9 GB, 3.7 GB)

yes

CART19_CLL

production/successful

191204_M03249_0036_000000000-CRWCR

yes (4.4 GB, 4.4 GB, 4.4 GB)

yes

CGD

production/successful

191210_M03249_0037_000000000-CV6KP

yes (6.1 GB, 6.1 GB, 6.1 GB)

yes

SCID3

production/successful

191213_M03249_0038_000000000-CV7MB

yes (6.2 GB, 6.2 GB, 6.2 GB)

yes

SCID3

production/successful

191217_M03249_0039_000000000-G4R7J

yes (1.6 GB, 1.6 GB, 1.6 GB)

yes

iGuide; Sample Run Set20 negative strand

production/successful

191218_M03249_0040_000000000-CRT4T

yes (5.1 GB, 5.1 GB, 5.1 GB)

yes

Vincent Wu; Mike Betts; HIV int7; D-F

production/successful

191219_M03249_0041_000000000-CMY27

yes (2.7 GB, 2.7 GB, 2.7 GB)

yes

Vincent Wu; ND519_PBMC_citeseq

production/successful

191220_M03249_0042_000000000-CRRWT

yes (5.4 GB, 5.4 GB, 5.4 GB)

yes

Vincent Wu; Mike Betts; HIV int7; G-I

production/successful

191223_M03249_0043_000000000-CV6KC

yes (5.0 GB, 5.0 GB, 5.0 GB)

yes

intsite_HIV_Penn_ODoherty_2314to2319_3422to3429_122319

production/successful

200103_M03249_0044_000000000-G4PJF

yes (-, 1.1 GB, 1.1 GB)

yes

Pascha Hokama; intsites; SCID3

production/successful

200106_M03249_0045_000000000-G4RDL

yes (-, 1.5 GB, 1.5 GB)

yes

Pascha Hokama; intsites; Beta Thalassemia

production/successful

200107_M03249_0046_000000000-G4RCL

yes (-, 1.0 GB, 1.0 GB)

yes

Shantan Reddy; Marina Cavazzana; intsites; SCIDn1 GeneTherapy Sample Set2

production/successful

200113_M03249_0047_000000000-CV7NF

yes (-, 3.9 GB, 3.9 GB)

yes

intsite_HIV_Penn_ODoherty_3445to3454_01132

production/successful

200117_M00281_0574_000000000-CTL26

yes (-, 3.7 GB, 3.7 GB)

yes

HemophiliaA_Wilcox

production/successful

200117_M03249_0048_000000000-CV7NP

yes (-, 5.2 GB, 5.2 GB)

yes

Shantan Reddy; Rick Bushman; intsites; CART19_NYCE GeneTherapy

production/successful

200128_M03249_0049_000000000-CV6JW

yes (-, 5.7 GB, 5.7 GB)

yes

Shantan Reddy; iGuide; Sample Run Set21 negative strand

production/successful

200131_M03249_0050_000000000-CPHC6

yes (-, 5.3 GB, 5.3 GB)

yes

Lenka_forSemir_PiebaldCanada_Chop_Penn_GFmonocolonization

production/successful

200203_M03249_0051_000000000-CY7JB

yes (-, 4.1 GB, 4.1 GB)

yes

Thrasher WAS

production/successful

200205_M03249_0052_000000000-CY765

yes (-, 3.1 GB, 3.1 GB)

yes

Shantan Reddy; Naomi Aronson; intsites; CD4zeta

production/successful

200207_M03249_0053_000000000-CY6R2

yes (-, 3.4 GB, 3.4 GB)

yes

Hayley; intsite_HIV_Penn_ODoherty_3455to3463_020720

production/successful

200214_M03249_0054_000000000-G4R7L

yes (-, 1.2 GB, 1.2 GB)

yes

Shantan Reddy; David Williams; intsites; SCD GeneTherapy

production/successful

200220_M03249_0055_000000000-CY3F2

yes (-, 4.8 GB, 4.8 GB)

yes

Pascha; insite_WAS_set2_ThrasherAndCavazzana

production/successful

200225_M03249_0056_000000000-CY6RP

yes (-, 6.2 GB, 6.2 GB)

yes

Shantan Reddy; Adrian Thrasher, Emmanuelle Six; intsites; WAS GeneTherapy Sample Set16

production/successful

200228_M03249_0057_000000000-CY6RK

yes (4.3 GB, 4.3 GB, 4.3 GB)

yes

Hayley; intsite_HIV_Penn_Bushman_JohnsHopkins_Blankson

production/successful

200303_M03249_0058_000000000-CY7CH

yes (4.7 GB, 4.7 GB, 4.7 GB)

yes

Pascha; intsite_HIV_Jones_3588to3593_03032020

production/successful

200305_M03249_0059_000000000-CMYV5

yes (1.3 GB, 1.3 GB, 1.3 GB)

yes

Vincent Wu; ND528_PBMC_citeseq

production/successful

200313_M03249_0060_000000000-G5FKB

yes (1.1 GB, 1.1 GB, 1.1 GB)

yes

Shantan Reddy; Stephanie Cherqui; intsites; CYS

production/successful

200403_M03249_0061_000000000-G5JMF

yes (0.0 GB, 0.0 GB, 0.0 GB)

production/successful

200404_M03249_0062_000000000-G5JW3

yes (0.9 GB, 0.9 GB, 0.9 GB)

production/successful

200507_M03249_0063_000000000-J3BF6

yes (1.8 GB, 1.8 GB, 1.8 GB)

production/successful

200508_M03249_0064_000000000-G5GLH

yes (0.6 GB, 0.6 GB, 0.6 GB)

production/successful

200518_M03249_0065_000000000-J37K3

yes (4.9 GB, 7.6 GB, 7.6 GB)

production/successful

200527_M03249_0066_000000000-J3R26

yes (6.2 GB, 7.6 GB, 7.6 GB)

production/successful

200609_M03249_0067_000000000-J37ML

yes (9.3 GB, 10.6 GB, 10.6 GB)

production/successful

200613_M03249_0068_000000000-J37GK

yes (4.3 GB, 6.3 GB, 6.3 GB)

production/successful

200618_M03249_0069_000000000-J3NJJ

yes (4.0 GB, 4.1 GB, 4.1 GB)

production/successful

200626_M03249_0070_000000000-CRD4J

yes (3.0 GB, 3.0 GB, 3.0 GB)

production/successful

200629_M03249_0071_000000000-J32C3

yes (1.9 GB, 1.9 GB, 1.9 GB)

production/successful

200703_M03249_0072_000000000-J77FG

yes (4.0 GB, 4.0 GB, 4.0 GB)

production/successful

200707_M03249_0073_000000000-G5JLD

yes (0.7 GB, 0.7 GB, 0.7 GB)

yes

production/successful

200713_M03249_0074_000000000-J77FR

yes (3.1 GB, 3.1 GB, 3.1 GB)

production/successful

200718_M03249_0075_000000000-G5GLG

yes (0.3 GB, 0.3 GB, 0.3 GB)

production/successful

200720_M03249_0076_000000000-J78FF

yes (3.4 GB, 3.4 GB, 3.4 GB)

production/successful

200723_M03249_0077_000000000-G5FD2

yes (0.7 GB, 0.7 GB, 0.7 GB)

yes

production/successful

200724_M03249_0078_000000000-J32RB

yes (0.0 GB, 0.0 GB, 0.0 GB)

production/successful

200725_M03249_0079_000000000-J2J3B

yes (4.1 GB, 4.1 GB, 4.1 GB)

production/successful

200727_M03249_0080_000000000-J37JP

yes (4.5 GB, 4.5 GB, 4.5 GB)

yes

production/successful

200729_M03249_0081_000000000-G677W

yes (0.0 GB, 0.0 GB, 0.0 GB)

production/successful

200804_M03249_0082_000000000-G67YG

yes (-, 0.9 GB, 0.9 GB)

yes

production/successful

200805_M03249_0083_000000000-J327N

yes (-, 4.0 GB, 4.0 GB)

production/successful

200814_M03249_0084_000000000-J3NP9

yes (-, 4.5 GB, 4.5 GB)

yes

production/successful

200816_M03249_0085_000000000-J757M

yes (-, 2.2 GB, 2.2 GB)

production/successful

200820_M03249_0086_000000000-J3NP6

yes (-, 2.3 GB, 2.3 GB)

yes

production/successful

200824_M03249_0087_000000000-JB8CJ

yes (-, 3.1 GB, 3.1 GB)

production/successful

200826_M03249_0088_000000000-JB8B6

yes (-, 1.2 GB, 1.2 GB)

production/successful

200828_M03249_0089_000000000-J7TYL

yes (-, 4.0 GB, 4.0 GB)

yes

production/successful

200831_M03249_0090_000000000-JB72G

yes (-, 4.6 GB, 4.6 GB)

yes

production/successful

200902_M03249_0091_000000000-G579F

yes (-, 1.4 GB, 1.4 GB)

yes

production/successful

200903_M03249_0092_000000000-JB7BM

yes (-, 3.5 GB, 3.5 GB)

yes

production/successful

200915_M03249_0094_000000000-G675D

yes (-, 1.1 GB, 1.1 GB)

yes

production/successful

200917_M03249_0095_000000000-JB7C4

yes (-, 2.3 GB, 2.3 GB)

production/successful

200922_M03249_0096_000000000-J4W6L

yes (-, 3.1 GB, 3.1 GB)

yes

production/successful

200924_M03249_0097_000000000-J54V5

yes (-, 4.6 GB, 4.6 GB)

production/successful

200928_M03249_0098_000000000-J79V4

yes (-, 2.4 GB, 2.4 GB)

production/successful

200930_M03249_0099_000000000-G5JMT

yes (-, 1.4 GB, 1.4 GB)

yes

production/successful

201002_M03249_0100_000000000-JBCL7

yes (-, 3.7 GB, 3.7 GB)

yes

production/successful

201004_M03249_0101_000000000-JBCKB

yes (-, 3.2 GB, 3.2 GB)

production/successful

201007_M03249_0102_000000000-JBCKY

yes (-, 4.4 GB, 4.4 GB)

yes

production/successful

201009_M03249_0103_000000000-JBCLH

yes (-, 4.2 GB, 4.2 GB)

yes

production/successful

201012_M03249_0104_000000000-JBCL8

yes (-, 5.0 GB, 5.0 GB)

yes

production/successful

201014_M03249_0105_000000000-J78D3

yes (-, 4.8 GB, 4.8 GB)

yes

production/successful

201016_M03249_0106_000000000-JCJNB

yes (-, 4.6 GB, 4.6 GB)

production/successful

201020_M03249_0107_000000000-JCHM4

yes (-, 5.0 GB, 5.0 GB)

yes

production/successful

201023_M03249_0108_000000000-JCLMK

yes (-, 5.0 GB, 5.0 GB)

production/successful

201028_M03249_0110_000000000-G675M

yes (-, 1.3 GB, 1.3 GB)

yes

production/successful

201030_M03249_0111_000000000-G66KN

yes (-, 1.2 GB, 1.2 GB)

yes

production/successful

201102_M03249_0112_000000000-JCFKL

yes (-, 4.1 GB, 4.1 GB)

yes

production/successful

201103_M03249_0113_000000000-JCLC7

yes (-, 4.1 GB, 4.1 GB)

yes

production/successful

201106_M03249_0115_000000000-JCDY8

yes (-, 3.4 GB, 3.4 GB)

yes

production/successful

201111_M03249_0116_000000000-D8LL4

yes (-, 0.0 GB, 0.0 GB)

production/successful

201113_M03249_0117_000000000-JCFK9

yes (-, 4.1 GB, 4.1 GB)

production/successful

201117_M03249_0118_000000000-JC6FF

yes (-, 3.4 GB, 3.4 GB)

production/successful

201120_M03249_0119_000000000-JCF3Y

yes (-, 2.3 GB, 2.3 GB)

production/successful

201122_M03249_0120_000000000-G6RFF

yes (-, 1.2 GB, 1.2 GB)

yes

production/successful

201123_M03249_0121_000000000-D6KV5

yes (-, 0.1 GB, 0.1 GB)

production/successful

201124_M03249_0122_000000000-D8L8D

yes (-, 0.2 GB, 0.2 GB)

production/successful

201125_M03249_0123_000000000-D8L7P

yes (-, 0.1 GB, 0.1 GB)

production/successful

201127_M03249_0124_000000000-G6TMY

yes (-, 0.9 GB, 0.9 GB)

yes

production/successful

201128_M03249_0125_000000000-JDJ4K

yes (-, 3.3 GB, 3.2 GB)

yes

production/successful

201130_M03249_0126_000000000-JD7C5

yes (-, 4.8 GB, 4.8 GB)

yes

production/successful

201202_M03249_0127_000000000-JDGCN

yes (-, 4.0 GB, 4.0 GB)

production/successful

201204_M03249_0128_000000000-JDVRR

yes (-, 3.7 GB, 3.7 GB)

yes

production/successful

201206_M03249_0129_000000000-JDHM3

yes (-, 4.0 GB, 4.0 GB)

yes

production/successful

201209_M03249_0130_000000000-G6RTL

yes (-, 0.9 GB, 0.9 GB)

yes

production/successful

201211_M03249_0131_000000000-JDGRV

yes (-, 4.5 GB, 4.5 GB)

production/successful

201213_M03249_0132_000000000-G6RFY

yes (-, 0.7 GB, 0.7 GB)

yes

production/successful

201214_M03249_0133_000000000-J78GM

yes (-, 3.9 GB, 7.0 GB)

production/successful

201217_M03249_0134_000000000-J3277

yes (-, 4.8 GB, 4.8 GB)

yes

production/successful

201221_M03249_0135_000000000-JF83C

yes (-, 0.1 GB, 0.1 GB)

production/successful

201223_M03249_0136_000000000-JG6TM

yes (-, 4.1 GB, 4.1 GB)

yes

register_run.py --file=/media/sequencing/Illumina/200403_M03249_0061_000000000-G5JMF --date=2020-04-03 --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: SARS_COV2_E6_CCLB1_04032020 | description: SARS_COV2_E6_CCLB1_04032020' register_run.py --file=/media/sequencing/Illumina/200404_M03249_0062_000000000-G5JW3 --date=2020-04-03 --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: SARS_COV2_E6_CCLB1_04032020 | description: SARS_COV2_E6_CCLB1_04032020' register_run.py --file=/media/sequencing/Illumina/200507_M03249_0063_000000000-J3BF6 --date=2020-05-07 --type=Illumina-MiSeq --kit='TruSeq Nano DNA' --comment='investigator: Vincent Wu | experiment: ND542_PBMC_citeseq' register_run.py --file=/media/sequencing/Illumina/200508_M03249_0064_000000000-G5GLH --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: RedondoSARS2_05082020 | description: RedondoSARS2_05082020' register_run.py --file=/media/sequencing/Illumina/200518_M03249_0065_000000000-J37K3 --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_SARS2trial1_05182020 | description: POLAR_SARS2trial1_05182020' register_run.py --file=/media/sequencing/Illumina/200527_M03249_0066_000000000-J3R26 --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set2_05232020 | description: POLAR_Set2_05232020' register_run.py --file=/media/sequencing/Illumina/200609_M03249_0067_000000000-J37ML --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set3_05232020 | description: POLAR_Set2_05232020' register_run.py --file=/media/sequencing/Illumina/200613_M03249_0068_000000000-J37GK --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set4_06132020 | description: POLAR_Set4_06132020' register_run.py --file=/media/sequencing/Illumina/200618_M03249_0069_000000000-J3NJJ --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set5_06182020 | description: POLAR_Set5_06182020' register_run.py --file=/media/sequencing/Illumina/200626_M03249_0070_000000000-CRD4J --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set6_06262020 | description: POLAR_Set6_06262020' register_run.py --file=/media/sequencing/Illumina/200629_M03249_0071_000000000-J32C3 --date=2020-06-29 --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Christopher Gu | experiment: 20200629_cfDNA_seq | description: 20200629_cfDNA_seq' register_run.py --file=/media/sequencing/Illumina/200703_M03249_0072_000000000-J77FG --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set7_07032020 | description: POLAR_Set7_07032020' register_run.py --file=/media/sequencing/Illumina/200707_M03249_0073_000000000-G5JLD --date=2020-07-07 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Hayley Raymond | experiment: intsite_CART19_Penn_Lacey_GTSP3576to3581_070720' register_run.py --file=/media/sequencing/Illumina/200713_M03249_0074_000000000-J77FR --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set8_07132020 | description: POLAR_Set8_07132020' register_run.py --file=/media/sequencing/Illumina/200718_M03249_0075_000000000-G5GLG --date=2020-07-18 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Simon Lacey; intsites; CART19 AML GeneTherapy Sample Set1 processed with standard primers; 35418-16' register_run.py --file=/media/sequencing/Illumina/200720_M03249_0076_000000000-J78FF --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set9_07202020 | description: POLAR_Set9_07202020' register_run.py --file=/media/sequencing/Illumina/200723_M03249_0077_000000000-G5FD2 --date=2020-07-23 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Simon Lacey; intsites; CART19 AML GeneTherapy Sample Set1 processed with standard primers; 35418-16' register_run.py --file=/media/sequencing/Illumina/200724_M03249_0078_000000000-J32RB --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set10_07242020 | description: POLAR_Set10_07242020' register_run.py --file=/media/sequencing/Illumina/200725_M03249_0079_000000000-J2J3B --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set10_07242020 | description: POLAR_Set10_07242020' register_run.py --file=/media/sequencing/Illumina/200727_M03249_0080_000000000-J37JP --date=2020-07-27 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Pai | experiment: Hriju Adhikari; intsites; WAS GTSP3630 to GTSP3641' register_run.py --file=/media/sequencing/Illumina/200729_M03249_0081_000000000-G677W --date=2020-07-29 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; Simon Lacey; intsites; CART19 CLL GeneTherapy Sample Set1 processed with standard primers; p18415-20, p18415-07' register_run.py --file=/media/sequencing/Illumina/200804_M03249_0082_000000000-G67YG --date=2020-08-04 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; Simon Lacey; intsites; CART19 CLL GeneTherapy Sample Set1 processed with standard primers; p18415-20, p18415-07' register_run.py --file=/media/sequencing/Illumina/200805_M03249_0083_000000000-J327N --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_CHOP_MisC_08052020 | description: POLAR_CHOP_MisC_08052020' register_run.py --file=/media/sequencing/Illumina/200814_M03249_0084_000000000-J3NP9 --date= --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Michel Sadelain | experiment: Pascha Hokama; intsite; Beta Thalassemia; GeneTherapy Samples; p1, p2, p3, p4 processed with standard primers' register_run.py --file=/media/sequencing/Illumina/200816_M03249_0085_000000000-J757M --date=2020-08-16 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Donald Kohn; intsites; ADA SCID GeneTherapy Sample Set1 processed with standard primers; p402, p406, p407, p410' register_run.py --file=/media/sequencing/Illumina/200820_M03249_0086_000000000-J3NP6 --date=2020-08-20 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; Simon Lacey; intsites; CART19 CLL GeneTherapy Sample Set2 processed with standard primers; p18415-12, p18415-13' register_run.py --file=/media/sequencing/Illumina/200824_M03249_0087_000000000-JB8CJ --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: POLAR_Set11_08242020 | description: POLAR_Set11_08242020' register_run.py --file=/media/sequencing/Illumina/200826_M03249_0088_000000000-JB8B6 --date=2020-08-26 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Donald Kohn; intsites; ADA SCID GeneTherapy Sample Set2 processed with standard primers; p401, p403, p404, p405, p408, p409' register_run.py --file=/media/sequencing/Illumina/200828_M03249_0089_000000000-J7TYL --date= --type=Illumina-MiSeq --kit='TruSeq LT' --comment='experiment: Pascha Hokama; intsite; Aruvant; GeneTherapy Samples; p1010004 processed with standard primers' register_run.py --file=/media/sequencing/Illumina/200831_M03249_0090_000000000-JB72G --date=2020-08-31 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Michael Grimley, Monika Asnani; intsites; Aruvant GeneTherapy Sample Set1 processed with standard primers; p1010006, p1010002, p1010004' register_run.py --file=/media/sequencing/Illumina/200902_M03249_0091_000000000-G579F --date=2020-09-02 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; David Williams; intsites; TransLab DNA library processed with standard primers; BCL-006, BCL-009' register_run.py --file=/media/sequencing/Illumina/200903_M03249_0092_000000000-JB7BM --date=2020-09-03 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; Simon Lacey; intsites; CART19 CLL GeneTherapy Sample Set3 processed with standard primers; p18415-13, p18415-15, p18415-16, p18415-17, p18415-18' register_run.py --file=/media/sequencing/Illumina/200915_M03249_0094_000000000-G675D --date=2020-09-15 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Marina Cavazzana; intsites; SCIDn2 GeneTherapy Sample Set11 processed with sinSCID primers; P1, P3, P5' register_run.py --file=/media/sequencing/Illumina/200917_M03249_0095_000000000-JB7C4 --date=2020-09-17 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Pascha Hokama | experiment: intsite_HIV_Jones_set2_3588to3593and3663to3666_09172020' register_run.py --file=/media/sequencing/Illumina/200922_M03249_0096_000000000-J4W6L --date=2020-09-22 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Adrian Thrasher, Marina Cavazzana; intsites; SCIDn2 GeneTherapy Sample Set12 processed with sinSCID primers; pSINSCID_UK01, P1, P2, P5' register_run.py --file=/media/sequencing/Illumina/200924_M03249_0097_000000000-J54V5 --date=2020-09-24 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='experiment: PaschaHokama; Donald Kohn; intsites; ADA SCID GeneTherapy Sample Set2 processed with standard primers; p401, p403, p404, p405, p408, p409' register_run.py --file=/media/sequencing/Illumina/200928_M03249_0098_000000000-J79V4 --date=2020-09-28 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Pascha Hokama | experiment: intsite_HIV_Jones_set2_3588to3593and3663to3666_09282020' register_run.py --file=/media/sequencing/Illumina/200930_M03249_0099_000000000-G5JMT --date=2020-09-30 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Derin Karadeniz; Stephanie Cherqui; intsites; CYS GeneTherapy Sample Set1 processed with standard primers; pCT.001, pCT.002' register_run.py --file=/media/sequencing/Illumina/201002_M03249_0100_000000000-JBCL7 --date=2020-10-02 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Simon Lacey | experiment: Pascha Hokama; intsites; CART19_Set6_GeneTherapy_GTSP3548to3561 ' register_run.py --file=/media/sequencing/Illumina/201004_M03249_0101_000000000-JBCKB --date=2020-10-04 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Luis Montaner; intsites; Wistar_HIV Sample Set1 processed with CPRU5 and LentiU3 primers; patient100-277, patient100-2644, patient100-2592, patient100-2980, patientMK027' register_run.py --file=/media/sequencing/Illumina/201007_M03249_0102_000000000-JBCKY --date=2020-10-07 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Myriam Armant; intsites; Boston TransLab library processed with standard primers; pBCL-002' register_run.py --file=/media/sequencing/Illumina/201009_M03249_0103_000000000-JBCLH --date=2020-10-09 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; David Williams Sung-Yun Pai; intsites; CGD GeneTherapy Sample Set1 processed with standard primers; pU107, pN106, pB109' register_run.py --file=/media/sequencing/Illumina/201012_M03249_0104_000000000-JBCL8 --date=2020-10-12 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Donald Kohn; intsites; ADA SCID GeneTherapy Sample Set3 processed with ADA SCID primers; p401, p402, p403, p404, p405' register_run.py --file=/media/sequencing/Illumina/201014_M03249_0105_000000000-J78D3 --date=2020-10-12 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='experiment: PaschaHokama; Donald Kohn; intsites; ADA SCID GeneTherapy Sample Set2 with updated primers' register_run.py --file=/media/sequencing/Illumina/201016_M03249_0106_000000000-JCJNB --date=2020-10-16 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Katie Marquis | experiment: JLTRGR5, 89.6, Viiv, GSK123 and GSK878' register_run.py --file=/media/sequencing/Illumina/201020_M03249_0107_000000000-JCHM4 --date=2020-10-20 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Myriam Armant; intsites; Boston TransLab library processed with standard primers; pBCL-002, pBCL-003, pBCL-004' register_run.py --file=/media/sequencing/Illumina/201023_M03249_0108_000000000-JCLMK --date=2020-10-23 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Williams and Pai | experiment: Pascha Hokama; CGD set2, pN104, pU107' register_run.py --file=/media/sequencing/Illumina/201028_M03249_0110_000000000-G675M --date=2020-10-28 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='experiment: PaschaHokama; Donald Kohn; intsites; ADA SCID GeneTherapy Sample p404 with updated primers' register_run.py --file=/media/sequencing/Illumina/201030_M03249_0111_000000000-G66KN --date=2020-10-30 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Derin Karadeniz; Sung Yun Pai; intsites; Boston WAS Sample Set2 processed with standard primers; pWAS00006' register_run.py --file=/media/sequencing/Illumina/201102_M03249_0112_000000000-JCFKL --date=2020-11-02 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; Sung Yun Pai; intsites; WAS GeneTherapy Sample Set1 processed with standard primers; pWAS00002, pWAS00004, pWAS00005' register_run.py --file=/media/sequencing/Illumina/201103_M03249_0113_000000000-JCLC7 --date=2020-11-03 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Simon Lacey, Stephanie Cherqui; intsites; CART19-NYCE GeneTherapy Sample Set2, CART19-CLL GeneTherapy Sample Set5, CYS GeneTherapy Sample Set4 processed with standard primers; pCT.001, pCT.002, p04409-01, p25416-07, p25416-35, p25416-39' register_run.py --file=/media/sequencing/Illumina/201106_M03249_0115_000000000-JCDY8 --date=2020-11-06 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; David Williams Sung-Yun Pai; intsites; CGD GeneTherapy Sample Set2 processed with standard primers; pU108' register_run.py --file=/media/sequencing/Illumina/201111_M03249_0116_000000000-D8LL4 --date=2020-11-11 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Derin Karadeniz; David Williams Sung-Yun Pai; intsites; SCID3 Sample Set 3 processed with standard primers; p302U' register_run.py --file=/media/sequencing/Illumina/201113_M03249_0117_000000000-JCFK9 --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: HLA_Seq | description: HLA_Seq_11132020' register_run.py --file=/media/sequencing/Illumina/201117_M03249_0118_000000000-JC6FF --date=2020-11-17 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Kevin McCormick | experiment: Shantan Reddy; Luis Montaner; intsites; Wistar_HIV Sample Set2 processed with CPRU5 and LentiU3 primers; p521, p522, p523, p524, p525' register_run.py --file=/media/sequencing/Illumina/201120_M03249_0119_000000000-JCF3Y --date=2020-11-20 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='' register_run.py --file=/media/sequencing/Illumina/201122_M03249_0120_000000000-G6RFF --date=2020-11-22 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Derin Karadeniz; David Williams Sung-Yun Pai; intsites; SCID3 Sample Set 3 processed with standard primers; p302U' register_run.py --file=/media/sequencing/Illumina/201123_M03249_0121_000000000-D6KV5 --date=2020-11-23 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Pascha Hokama | experiment: intsite_HIV_Persaud' register_run.py --file=/media/sequencing/Illumina/201124_M03249_0122_000000000-D8L8D --date=2020-11-23 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Pascha Hokama | experiment: intsite_HIV_Persaud_JH0305' register_run.py --file=/media/sequencing/Illumina/201125_M03249_0123_000000000-D8L7P --date=2020-11-25 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Pascha Hokama | experiment: intsite_HIV_Persaud_JH0117' register_run.py --file=/media/sequencing/Illumina/201127_M03249_0124_000000000-G6TMY --date=2020-11-27 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Myriam Armant; intsites; Boston TransLab library 3 repeat processed with standard primers; pBCL-002, pBCL-003' register_run.py --file=/media/sequencing/Illumina/201128_M03249_0125_000000000-JDJ4K --date=2020-11-28 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Saba Ghassemi; intsites; CART_SG GeneTherapy Sample Set1 processed with standard primers; pnd528' register_run.py --file=/media/sequencing/Illumina/201130_M03249_0126_000000000-JD7C5 --date=2020-11-30 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Derin Karadeniz; David Williams Sung-Yun Pai; intsites; SCID3 Sample Set 4 processed with standard primers; p302U, p304G, p305B, p306G, p307G' register_run.py --file=/media/sequencing/Illumina/201202_M03249_0127_000000000-JDGCN --date=2020-12-02 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Williams and Pai | experiment: Pascha Hokama; CGD set3, pU107, pU108' register_run.py --file=/media/sequencing/Illumina/201204_M03249_0128_000000000-JDVRR --date=2020-12-04 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; David Williams Sung-Yun Pai; intsites; SCID3; GeneTherapy Sample Set1 processed with standard primers; p301B, p302U' register_run.py --file=/media/sequencing/Illumina/201206_M03249_0129_000000000-JDHM3 --date=2020-12-06 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; intsites; Positive Control; GeneTherapy Sample Set1 processed with standard primers' register_run.py --file=/media/sequencing/Illumina/201209_M03249_0130_000000000-G6RTL --date=2020-12-09 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Simon Lacey; intsites; CXCR4 GeneTherapy Sample Set2 processed with standard primers; pC34-CXCR4-04, pC34-CXCR4-05, pC34-CXCR4-06, pC34-CXCR4-10' register_run.py --file=/media/sequencing/Illumina/201211_M03249_0131_000000000-JDGRV --date=2020-12-11 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: Pascha Hokama | experiment: intsite_HIV_BlanksonxScott_set1_20201211' register_run.py --file=/media/sequencing/Illumina/201213_M03249_0132_000000000-G6RFY --date=2020-12-13 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Derin Karadeniz; Sung Yun Pai; intsites; Boston WAS Sample Set5 processed with standard primers; pWAS00005' register_run.py --file=/media/sequencing/Illumina/201214_M03249_0133_000000000-J78GM --date= --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Pascha Hokama | experiment: PennSecurity_COVID19 | description: PennSecurity_COVID19' register_run.py --file=/media/sequencing/Illumina/201217_M03249_0134_000000000-J3277 --date=2020-12-17 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Shantan Reddy; Myriam Armant; intsites; Boston TransLab library Set5, Set6 and Set7 processed with standard primers; pBCL-004, pBCL-006, pBCL-007' register_run.py --file=/media/sequencing/Illumina/201221_M03249_0135_000000000-JF83C --date=2020-12-19 --type=Illumina-MiSeq --kit='Nextera XT' --comment='investigator: Christopher Gu | experiment: 20201219_BCisolates_seq1 | description: 20201219_BCisolates_seq1' register_run.py --file=/media/sequencing/Illumina/201223_M03249_0136_000000000-JG6TM --date=2020-12-23 --type=Illumina-MiSeq --kit='TruSeq LT' --comment='investigator: John Everett | experiment: Hriju Adhikari; Punam Malik; intsites; SCGT GeneTherapy Sample Set1 processed with standard primers; p18879, p18900, p19190'