| data archived | (yes/no) sequencing data has been stored in both its primary and secondary archive locations. The data sizes following this flag denote the data sizes in the data output directory, primary archive and secondary archive. A dash for the output directory data size means that this data has been removed to conserve space. Notable size differences between archives are noted in red. | |
| run registered | (yes/no) sequencing run event has been registered in the sequencing registry. | |
| samples registered | (yes/no) meta data for samples within a run have been registered in the sequencing registry. | |
| intSites called | (yes/no) integration site analyses have been performed (gene therapy runs only) | |
| admin | administrator notes for runs where the sample meta data has not been archived in the registry. |
| Status | Run id | data archived | run registered | samples registered | intSites called | links | admin | |||||||
| production/successful | 180105_M03249_0307_000000000-BJTJC | yes (-, 1.4 GB, 1.4 GB) | yes | no | - | - | Meagan Rubel, MAR_Cameroon_V4_Run1_1518. | |||||||
| production/successful | 180118_M03249_0308_000000000-BGFVC | yes (-, 2.7 GB, 2.7 GB) | yes | no | - | - | Meagan Rubel, Cameroon V4 Run 1, Attempt 2. First 192 Cameroon gut microbiome samples. | |||||||
| production/successful | 180124_M03249_0309_000000000-BCHL7 | yes (-, 4.2 GB, 4.2 GB) | yes | no | - | - | Meagan Rubel, CM_V4_R2. | |||||||
| production/successful | 180126_M03249_0310_000000000-BM26F | yes (-, 0.0 GB, 0.0 GB) | yes | yes | - | - | Lyanna Kessler, Baby Virome Shotgun. | |||||||
| production/successful | 180130_M03249_0311_000000000-BLDNC | yes (-, 0.1 GB, 0.1 GB) | yes | no | - | - | Meagan Rubel, CM_V4_R3. | |||||||
| production/successful | 180130_M03249_0312_000000000-BL49M | yes (-, 4.9 GB, 4.9 GB) | yes | no | - | - | Meagan Rubel, CM_V4_R3. | |||||||
| production/successful | 180131_M00281_0317_000000000-BLFD2 | yes (-, 1.4 GB, 1.4 GB) | yes | no | - | - | Shantan Reddy; Paul Bates; Zika CRISPR Screen | |||||||
| development/successful | 180201_M03249_0313_000000000-B6V99 | yes (-, 1.8 GB, 1.8 GB) | yes | no | - | - | Shantan Reddy; iGuideSeq; Sample Run Set1 | |||||||
| development/successful | 180205_M03249_0314_000000000-BM8GW | yes (-, 2.1 GB, 2.1 GB) | yes | no | - | - | Shantan Reddy; iGuide; Sample Run Set2 negative strand | |||||||
| development/successful | 180212_M03249_0315_000000000-BLLNK | yes (-, 6.0 GB, 6.0 GB) | yes | no | - | - | Shantan Reddy; iGuide; Sample Run Set2 negative strand | |||||||
| development/successful | 180214_M03249_0316_000000000-BLDRH | yes (-, 2.2 GB, 2.2 GB) | yes | no | - | - | Shantan Reddy; iGuide; Sample Run Set3 negative strand | |||||||
| development/successful | 180215_M00281_0322_000000000-BM6NM | yes (-, 0.2 GB, 0.2 GB) | yes | no | - | - | Shantan Reddy; Paul Bates; Zika CRISPR Screen rerun | |||||||
| production/successful | 180216_M03249_0317_000000000-BMWY8 | yes (-, 0.1 GB, 0.1 GB) | yes | no | - | - | Jake Leiby; piggyBac, adenovirus vectors, Patrick Sinn,pig model | |||||||
| production/successful | 180220_M00281_0323_000000000-BMWYV | yes (-, 0.2 GB, 3.1 GB) | yes | yes | - | - | Jake Leiby; piggyBac, adenovirus vectors, Patrick Sinn,pig model | |||||||
| production/successful | 180220_M03249_0318_000000000-BMHHP | yes (-, 2.3 GB, 2.3 GB) | yes | yes | - | - | John Gregg; Scott Sherrill-Mix; HIV Provirus; p108, p111, p159, p241. | |||||||
| production/successful | 180222_M03249_0319_000000000-BMHW4 | yes (-, 3.7 GB, 3.7 GB) | yes | yes | yes | - | John Gregg; David Williams; SCIDn2 GeneTherapy p00007, p00003 | |||||||
| production/successful | 180227_M03249_0320_000000000-BNDMW | yes (-, 4.4 GB, 4.4 GB) | yes | yes | yes | - | Shantan Reddy; David Williams; SCIDn2 GeneTherapy p00009, p00008, p00005 | |||||||
| production/successful | 180301_M03249_0321_000000000-BNDFG | yes (-, 1.8 GB, 1.8 GB) | yes | no | - | - | Shantan Reddy; Paul Bates; Zika CRISPR Screen rerun2 | |||||||
| production/successful | 180305_M00281_0327_000000000-BMK22 | yes (-, 1.3 GB, 1.3 GB) | yes | yes | - | - | Vincent Wu; Mike Betts; HIV Provirus; Custom Primers; E2S, CAGN, JAGN. | |||||||
| production/successful | 180305_M03249_0322_000000000-BMCRN | yes (-, 4.4 GB, 4.4 GB) | yes | yes | yes | - | Shantan Reddy; Sung-Yun Pai and David Williams; pWAS00006 | |||||||
| production/successful | 180308_M03249_0323_000000000-BN9MT | yes (-, 5.0 GB, 4.9 GB) | yes | yes | yes | - | Shantan Reddy; Sung-Yun Pai and David Williams; pWAS00006, pWAS00005, pWAS00004 | |||||||
| production/successful | 180314_M03249_0324_000000000-BNL7M | yes (-, 5.9 GB, 5.9 GB) | yes | yes | yes | - | John Gregg; David Williams; CGD GeneTherapy pU103 | |||||||
| production/successful | 180316_M03249_0325_000000000-BNBPM | yes (-, 5.8 GB, 5.8 GB) | yes | yes | yes | - | John Gregg; David Williams; CGD GeneTherapy pN102, pB101 | |||||||
| production/successful | 180319_M03249_0326_000000000-BNL7R | yes (-, 4.2 GB, 4.2 GB) | yes | yes | yes | - | Shantan Reddy; Leo Wang and David Williams; CGD GeneTherapy pU103, pN104, pN102 | |||||||
| production/successful | 180322_M03249_0327_000000000-BNRJF | yes (-, 3.8 GB, 3.8 GB) | yes | yes | yes | - | Shantan Reddy; David Williams; SCIDn2 GeneTherapy p00003, p00008 | |||||||
| production/successful | 180323_M00281_0335_000000000-BNWHF | yes (-, 4.8 GB, 4.8 GB) | yes | yes | - | - | Jake Leiby; jsl_Placenta_16S_2 | |||||||
| production/successful | 180327_M00281_0336_000000000-BNWH5 | yes (-, 2.9 GB, 2.9 GB) | yes | yes | yes | - | John Gregg; Stephanie Cherqui; CYS GeneTherapy | |||||||
| production/successful | 180328_M03249_0328_000000000-BNL6K | yes (-, 3.7 GB, 3.7 GB) | yes | yes | yes | - | Shantan Reddy; Carl June; CART19 p04409-01, p04409-02 | |||||||
| production/successful | 180406_M00281_0341_000000000-BPPBY | yes (-, 2.6 GB, 2.6 GB) | yes | no | - | - | John Gregg; Blankson; GeneTherapy p169, pES24, pCP31 | |||||||
| production/successful | 180406_M03249_0329_000000000-BPR62 | yes (-, 7.8 GB, 7.7 GB) | yes | yes | - | - | Jacob Leiby, VK_V4_jsl | |||||||
| production/successful | 180411_M03249_0330_000000000-BPR5R | yes (-, 3.1 GB, 3.1 GB) | yes | no | no | - | Shantan Reddy; Gijsbers; sinMLV (outsourced library from Belgium) | |||||||
| production/successful | 180416_M03249_0331_000000000-BPV27 | yes (-, 5.0 GB, 5.0 GB) | yes | no | yes | - | John Gregg; Catherine Terrell; SCGT GeneTherapy pSCGT002, pSCGT004 | |||||||
| production/successful | 180427_M03249_0332_000000000-BR7V8 | yes (-, 3.5 GB, 3.5 GB) | yes | yes | no | - | CXCR4 run -- (!) incorrect primers used, indigenous viruses may be found. Need to repeat. | |||||||
| production/successful | 180501_M03249_0333_000000000-G1JBV | yes (-, 0.8 GB, 0.8 GB) | yes | yes | yes | - | John Gregg; Donald Kohn, David Williams; CGD Cryo Test, pN105, pN104 | |||||||
| production/successful | 180508_M03249_0334_000000000-G1V9F | yes (-, 1.0 GB, 1.0 GB) | yes | yes | yes | - | John Gregg; Donald Kohn, David Williams; CGD GeneTherapy Cryo Test, pN105, pN104 | |||||||
| production/successful | 180510_M03249_0335_000000000-BT7FJ | yes (-, 5.0 GB, 5.0 GB) | yes | yes | yes | - | John Gregg; David Williams; SCIDn2 GeneTherapy; p00009, p00007, p00008 | |||||||
| production/successful | 180517_M00281_0353_000000000-BT95N | yes (-, 4.8 GB, 4.8 GB) | yes | no | - | - | Jake Lieby - COMBO_V1V2 | |||||||
| production/successful | 180517_M03249_0336_000000000-BT6H8 | yes (-, 3.6 GB, 3.6 GB) | yes | no | - | - | Shantan - iGuide Sample Run Set4 and Set5 negative strand | |||||||
| production/successful | 180521_M03249_0337_000000000-BT8J3 | yes (-, 5.4 GB, 5.4 GB) | yes | yes | yes | - | WAS Sample Set10, pWAS_UK05, pWAS_UK04, pWAS_UK11 | |||||||
| production/successful | 180524_M03249_0338_000000000-BT7GL | yes (-, 5.1 GB, 5.1 GB) | yes | yes | yes | - | WAS pWAS_UK05 and pWAS_UK02 | |||||||
| production/successful | 180607_M03249_0339_000000000-D3KYN | yes (-, 0.5 GB, 0.5 GB) | yes | no | - | - | Jacob Leiby - Spark Pilot, 5p1 primers | |||||||
| production/successful | 180614_M03249_0340_000000000-B6T5D | yes (-, 3.8 GB, 3.8 GB) | yes | no | - | - | Shantan - target assay | |||||||
| production/successful | 180619_M03249_0341_000000000-BTP2G | yes (-, 3.0 GB, 3.0 GB) | yes | no | - | - | Blankson HIV samples, LentiU3 and CPRU5 primers | |||||||
| production/successful | 180620_M03249_0342_000000000-G254W | yes (-, 1.3 GB, 1.3 GB) | yes | no | - | - | Partials_6_20_18 | |||||||
| production/successful | 180627_M00281_0364_000000000-D352K | yes (-, 0.4 GB, 0.4 GB) | yes | no | - | - | Spark2; AAV vector; 3p1v2 primers | |||||||
| production/successful | 180627_M03249_0343_000000000-BWDLF | yes (-, 5.4 GB, 5.4 GB) | yes | yes | yes | - | SCIDn2 p00009, p00008, p00005 | |||||||
| production/successful | 180629_M03249_0344_000000000-BWCP2 | yes (-, 6.1 GB, 6.1 GB) | yes | no | - | - | Jake Lieby - MICU_ITS2 | |||||||
| production/successful | 180703_M03249_0345_000000000-BNBRG | yes (-, 0.0 GB, 0.0 GB) | yes | no | - | - | Jake Lieby - MICU_16S | |||||||
| production/successful | 180706_M03249_0346_000000000-BWJYP | yes (-, 3.2 GB, 3.2 GB) | yes | yes | yes | - | CART19 Sample Set17 p03712-06 | |||||||
| production/successful | 180719_M03249_0347_000000000-G278G | yes (-, 0.3 GB, 0.3 GB) | yes | yes | - | - | pSINSCID_UK01 | |||||||
| production/successful | 180723_M03249_0348_000000000-BWJYY | yes (-, 3.2 GB, 3.2 GB) | yes | no | no | - | Vincent Wu, Mike Betts, HIV Provirus Intsites: E2S, CAGN, JAGN, JLRL | |||||||
| production/successful | 180725_M03249_0349_000000000-BY6FG | yes (-, 6.4 GB, 6.4 GB) | yes | no | - | - | Jake Lieby - MICU_16S_3 | |||||||
| production/successful | 180727_M03249_0350_000000000-BWDN5 | yes (-, 4.0 GB, 4.0 GB) | yes | yes | yes | - | aiCART Sample Set3 p04511-309, p04511-316 | |||||||
| development/successful | 180730_M03249_0351_000000000-BWK23 | yes (-, 9.4 GB, 9.4 GB) | yes | no | - | - | Spark3 set1 5p and 3p_primers | |||||||
| production/successful | 180801_M03249_0352_000000000-BY86N | yes (-, 3.2 GB, 3.2 GB) | yes | yes | no | - | pSINSCID_UK01 | |||||||
| production/successful | 180803_M03249_0353_000000000-BY7RC | yes (-, 3.6 GB, 3.6 GB) | yes | yes | - | - | sinSCID GTSP 2041-2048 | |||||||
| production/successful | 180815_M03249_0354_000000000-C28RM | yes (-, 5.1 GB, 5.1 GB) | yes | no | yes | - | CGD pB101, pN104, pU103 | |||||||
| production/successful | 180817_M03249_0355_000000000-C29GK | yes (-, 3.3 GB, 3.3 GB) | yes | no | no | - | sinMLV outsourced library 2 from Belgium | |||||||
| development/successful | 180820_M03249_0356_000000000-C2874 | yes (-, 2.4 GB, 2.4 GB) | yes | no | - | - | Guanxiang WGS - infant stool | |||||||
| development/successful | 180822_M03249_0357_000000000-C29M4 | yes (-, 5.6 GB, 5.6 GB) | yes | no | - | - | iGuide; Sample Run Set6 negative strand | |||||||
| production/successful | 180824_M03249_0358_000000000-C29H2 | yes (-, 4.5 GB, 4.5 GB) | yes | yes | yes | - | UCSD Cystinosis | |||||||
| production/successful | 180829_M03249_0359_000000000-C29FR | yes (-, 4.2 GB, 4.2 GB) | yes | no | - | - | sinSCID p00009 | |||||||
| development/successful | 180831_M03249_0360_000000000-C3CG8 | yes (-, 4.3 GB, 4.3 GB) | yes | no | - | - | iGuide sample Run Set7 negative strand | |||||||
| production/successful | 180905_M03249_0361_000000000-C2J4B | yes (-, 5.5 GB, 5.5 GB) | yes | no | yes | - | CGD GTSP 2065-2078 | |||||||
| development/successful | 180907_M03249_0362_000000000-BT6MD | yes (-, 3.1 GB, 3.1 GB) | yes | no | - | - | Jake Lieby - Collman_16S | |||||||
| production/successful | 180910_M03249_0363_000000000-C32BV | yes (-, 5.4 GB, 5.4 GB) | yes | yes | yes | - | WAS pWAS00002, pWAS00003, pWAS00005 | |||||||
| /successful | 180912_M03249_0364_000000000-C3C5L | yes (-, 3.7 GB, 3.7 GB) | yes | no | no | - | Vincent Wu, HIV Provirus Intsites, U3 and U5, JAGN, GMCB, CAGN, EZS | |||||||
| development/successful | 180920_M03249_0365_000000000-C3CH4 | yes (-, 7.3 GB, 7.3 GB) | yes | no | - | - | Jake Leiby, Dog_Hemo; AAV vector | |||||||
| /successful | 180924_M03249_0366_000000000-C3GMN | yes (-, 4.2 GB, 4.2 GB) | yes | no | yes | - | Hayley Raymond, WAS - Boston, GTSP2128-2139 | |||||||
| /successful | 180928_M03249_0367_000000000-C4TGY | yes (-, 5.7 GB, 5.7 GB) | yes | no | yes | - | Shantan Reddy, WAS - Boston, pWAS00002, pWAS00004, pWAS00005, pWAS00006 | |||||||
| /successful | 181001_M03249_0368_000000000-G2NR4 | yes (-, 0.9 GB, 0.9 GB) | yes | no | yes | - | Hayley Raymond, CGD, GTSP2093-2099 | |||||||
| /successful | 181005_M03249_0369_000000000-C4THP | yes (-, 4.5 GB, 4.5 GB) | yes | no | yes | - | Hayley Raymond, CYS - final samples before IND | |||||||
| /successful | 181010_M03249_0370_000000000-C3J8V | yes (-, 5.0 GB, 5.0 GB) | yes | no | yes | - | Shantan Reddy, WAS - France, pFR01, pFR03, pFR05 | |||||||
| /successful | 181018_M03249_0371_000000000-BJHBC | yes (-, 4.6 GB, 4.6 GB) | yes | no | yes | - | SCIDn1: pP2, pP7, pP9, pP10 | |||||||
| /successful | 181022_M03249_0372_000000000-D4PV6 | yes (-, 0.4 GB, 0.4 GB) | yes | no | - | - | Jake, CGD shotgun test | |||||||
| /successful | 181024_M03249_0373_000000000-C3HV4 | yes (-, 2.3 GB, 2.3 GB) | yes | no | no | - | Vincent Wu; Mike Betts - HIV integration | |||||||
| /successful | 181026_M03249_0374_000000000-C4NK2 | yes (-, 5.1 GB, 5.1 GB) | yes | no | yes | - | Hayley, CGD / SCIDn2 | |||||||
| /successful | 181030_M03249_0375_000000000-BNL22 | yes (-, 5.4 GB, 5.4 GB) | yes | no | - | - | Shantan, iGuide, set8 | |||||||
| /successful | 181101_M03249_0376_000000000-C276W | yes (-, 2.3 GB, 2.3 GB) | yes | no | - | - | Lenka Dohnalova run | |||||||
| /successful | 181105_M03249_0377_000000000-BJJRG | yes (-, 3.0 GB, 3.0 GB) | yes | no | - | - | Oxana Dmitrieva - TRF_cohousedGF | |||||||
| /successful | 181107_M03249_0378_000000000-C4TKD | yes (-, 0.1 GB, 0.1 GB) | yes | no | no | - | Jake, CGD GeneTherapy; N104, B101, N102, U107, Failed run | |||||||
| /successful | 181109_M00281_0421_000000000-C599F | yes (-, 3.1 GB, 3.1 GB) | yes | no | yes | - | Jake, CGD GeneTherapy; N104, B101, N102, U107 | |||||||
| /successful | 181109_M03249_0379_000000000-C3GN3 | yes (-, 5.1 GB, 5.1 GB) | yes | no | yes | - | Hayley, SCGT | |||||||
| /successful | 181112_M03249_0380_000000000-C5B4W | yes (-, 5.3 GB, 5.3 GB) | yes | no | yes | - | Hayley, Mixed trials | |||||||
| /successful | 181116_M03249_0381_000000000-BNVJR | yes (-, 0.3 GB, 0.3 GB) | yes | no | - | - | Lenka, TRF1 | |||||||
| /successful | 181120_M03249_0382_000000000-C5V2D | yes (-, 4.6 GB, 4.6 GB) | yes | no | yes | - | Shantan Reddy; Carl June; intsites; CART19 GeneTherapy Sample Set18 | |||||||
| /successful | 181121_M03543_0129_000000000-C66HR | yes (-, 4.0 GB, 4.0 GB) | yes | no | yes | - | Shantan Reddy; Carl June; intsites; CART19 GeneTherapy Sample Set18 | |||||||
| /successful | 181126_M03249_0383_000000000-C683W | yes (-, 4.3 GB, 4.3 GB) | yes | no | yes | - | Jake Leiby; Six; intsites; bthal | |||||||
| /successful | 181130_M03249_0384_000000000-C59CV | yes (-, 4.1 GB, 4.1 GB) | yes | no | yes | - | Shantan Reddy; Marina Cavazzana; intsites; SCIDn2 GeneTherapy | |||||||
| /successful | 181201_M03249_0385_000000000-BT9T8 | yes (-, 5.6 GB, 0.0 GB) | yes | no | - | - | Lenka - TRF2 | |||||||
| /successful | 181203_M03249_0386_000000000-BTBDY | yes (-, 2.3 GB, 2.3 GB) | yes | no | - | - | Oxana, no description | |||||||
| /successful | 181205_M03249_0387_000000000-C66HC | yes (-, 3.0 GB, 3.0 GB) | yes | no | no | - | Hayley, HIV_Odoherty | |||||||
| /successful | 181207_M03249_0388_000000000-C7K26 | yes (-, 5.6 GB, 5.6 GB) | yes | no | - | - | Shantan, iGuide Sample Run Set9 negative strand | |||||||
| /successful | 181211_M03249_0389_000000000-C5VHT | yes (-, 5.8 GB, 5.8 GB) | yes | no | - | - | Lenka, TRF3_mice4_6 | |||||||
| /successful | 181213_M00281_0435_000000000-G3BCW | yes (-, 0.9 GB, 0.9 GB) | yes | no | - | - | Shantan, iGuide Sample Run Set10 negative strand | |||||||
| /successful | 181214_M03249_0390_000000000-C5P5M | yes (-, 5.9 GB, 5.9 GB) | yes | no | - | - | Lenka, TRF1Rep_mice1_5 | |||||||
| /successful | 181217_M03249_0391_000000000-C7K7C | yes (-, 4.3 GB, 4.3 GB) | yes | no | yes | - | Hayley, intsite_CXCR4_Penn_Lacey | |||||||
| /successful | 181221_M03249_0392_000000000-C7KFM | yes (-, 4.9 GB, 4.9 GB) | yes | no | - | - | Jake, WAS set, patients 3 4 5 | |||||||
| /successful | 190107_M03249_0393_000000000-C5RKH | yes (4.7 GB, 4.7 GB, 4.7 GB) | yes | no | - | - | Lenka | |||||||
| /successful | 190108_M05588_0153_000000000-C7K9D | yes (-, 3.7 GB, 3.7 GB) | yes | no | no | - | Hayley; Jones HIV | |||||||
| /successful | 190110_M03249_0394_000000000-C5GKR | yes (4.2 GB, 4.2 GB, 4.2 GB) | yes | no | yes | - | Shantan; Boston WAS | |||||||
| /successful | 190111_M03249_0395_000000000-C5RL4 | yes (5.8 GB, 5.8 GB, 5.7 GB) | yes | no | - | - | Lenka | |||||||
| /successful | 190114_M03249_0396_000000000-C7KPM | yes (3.6 GB, 3.6 GB, 3.5 GB) | yes | no | - | - | Jake; Belgian ext lib | |||||||
| /successful | 190116_M03249_0397_000000000-C7KD5 | yes (2.6 GB, 2.6 GB, 2.6 GB) | yes | no | no | - | Hayely; Jones HIV | |||||||
| /successful | 190118_M03249_0398_000000000-C68YB | yes (4.6 GB, 4.6 GB, 4.6 GB) | yes | no | yes | - | Shantan; Bostn WAS | |||||||
| /successful | 190123_M03249_0399_000000000-C6NT5 | yes (3.6 GB, 3.6 GB, 3.6 GB) | yes | no | - | - | ||||||||
| /successful | 190125_M03249_0400_000000000-C5N8K | yes (7.3 GB, 7.3 GB, 7.3 GB) | yes | no | - | - | ||||||||
| /successful | 190127_M03249_0401_000000000-C8MGJ | yes (4.9 GB, 4.9 GB, 4.9 GB) | yes | no | yes | - | ||||||||
| /successful | 190129_M03249_0402_000000000-BJG4C | yes (0.1 GB, 0.1 GB, 0.1 GB) | yes | no | - | - | ||||||||
| /successful | 190131_M03249_0403_000000000-C8N9D | yes (0.2 GB, 0.2 GB, 0.2 GB) | yes | no | no | - | ||||||||
| /successful | 190201_M00281_0451_000000000-C8N97 | yes (-, 3.9 GB, 3.9 GB) | yes | no | no | - | ||||||||
| /successful | 190204_M00281_0452_000000000-C8N9B | yes (-, 1.1 GB, 1.1 GB) | yes | no | - | - | ||||||||
| /successful | 190205_M04734_0148_000000000-C8MG3 | yes (-, 2.6 GB, 2.6 GB) | yes | no | yes | - | ||||||||
| production/successful | 190214_M03249_0404_000000000-C9BCL | yes (4.7 GB, 4.7 GB, 4.7 GB) | no | no | yes | - |